MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:1296.9 nTPM
HPA:1296.9 nTPM
GTEx:760.2 nTPM
FANTOM5:689.1 Scaled Tags Per Million
Pig:569.7 nTPM
Mouse:738.8 nTPM
Allen mouse:9.4 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 1296.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1243.9
2411 Female, age 72, unknown 1298.8
2586 Male, age 75, left hemisphere 1297.8
2828 Female, age 72, unknown 1249.7
2019 Male, age 18, unknown 1244.7
1827 Male, age 72, unknown 1235.0
1833 Male, age 53, unknown 1232.3
2219 Male, age 76, both hemispheres 1227.8
1870 Female, age 42, unknown 1226.9
1830 Male, age 51, unknown 1222.5
2666 Male, age 74, left hemisphere 1202.9
Dorsal raphe nucleus
nTPM: 1226.4
2750 Male, age 76, both hemispheres 1258.7
2298 Female, age 72, unknown 1248.0
1828 Male, age 53, unknown 1218.0
2047 Male, age 72, unknown 1206.9
2016 Female, age 72, unknown 1200.2
Inferior colliculus
nTPM: 1200.8
2097 Female, age 72, unknown 1225.0
1890 Male, age 53, unknown 1202.7
1848 Female, age 42, unknown 1192.5
2849 Male, age 72, unknown 1182.9
Median raphe nucleus
nTPM: 1238.5
2220 Male, age 76, midline 1238.5
Pedunculopontine tegmental nucleus
nTPM: 1232.8
2334 Male, age 80, both hemispheres 1258.0
1921 Female, age 85, both hemispheres 1250.2
2338 Male, age 61, both hemispheres 1190.1
Periaquaductal grey, anterior
nTPM: 1253.9
2502 Female, age 75, unknown 1261.7
1947 Male, age 18, unknown 1259.5
1795 Male, age 51, unknown 1240.6
Periaquaductal grey, dorsal
nTPM: 1191.7
2464 Female, age 72, unknown 1208.6
1840 Male, age 53, unknown 1201.0
2850 Male, age 76, both hemispheres 1179.7
1831 Male, age 72, unknown 1177.7
Periaquaductal grey, lateral
nTPM: 1186.8
2140 Male, age 76, both hemispheres 1192.5
2053 Male, age 18, unknown 1190.4
2272 Male, age 74, both hemispheres 1177.6
Pretectal area
nTPM: 1234.6
1817 Female, age 42, unknown 1278.1
1944 Female, age 72, unknown 1274.7
1815 Male, age 53, unknown 1273.9
2007 Male, age 72, unknown 1272.3
1816 Male, age 51, unknown 1270.4
2667 Female, age 75, unknown 1214.7
2224 Female, age 72, unknown 1213.2
2825 Male, age 18, unknown 1213.0
2316 Male, age 76, right hemisphere 1204.0
2273 Male, age 74, both hemispheres 1189.0
2407 Male, age 75, both hemispheres 1177.1
Red nucleus
nTPM: 1268.3
2503 Female, age 72, unknown 1303.7
1821 Female, age 72, unknown 1291.7
2227 Male, age 72, unknown 1283.7
1904 Male, age 53, unknown 1282.6
1865 Male, age 51, unknown 1278.2
2769 Male, age 72, unknown 1277.4
2725 Female, age 75, unknown 1277.2
2785 Male, age 18, unknown 1267.0
1954 Female, age 42, unknown 1265.5
2588 Male, age 74, left hemisphere 1264.2
2823 Male, age 76, right hemisphere 1236.5
2584 Male, age 75, left hemisphere 1191.7
Substantia nigra
nTPM: 1296.9
1851 Male, age 51, unknown 1370.0
1916 Female, age 42, unknown 1344.0
2665 Male, age 74, both hemispheres 1329.7
2241 Male, age 72, unknown 1296.2
2699 Male, age 18, unknown 1294.7
2409 Female, age 72, unknown 1276.0
2583 Male, age 75, right hemisphere 1274.9
1941 Male, age 53, unknown 1272.5
1889 Female, age 72, unknown 1256.9
2590 Female, age 75, unknown 1254.1
Superior colliculus
nTPM: 1242.8
2668 Female, age 75, unknown 1281.5
2087 Female, age 72, unknown 1278.5
1796 Male, age 53, unknown 1260.8
1913 Female, age 42, unknown 1250.3
2261 Male, age 18, unknown 1248.5
1995 Male, age 72, unknown 1244.1
2664 Male, age 75, both hemispheres 1226.1
2587 Male, age 74, left hemisphere 1221.1
1895 Male, age 76, right hemisphere 1209.1
1839 Male, age 51, unknown 1208.1
Ventral tegmental area
nTPM: 1279.9
2410 Female, age 72, unknown 1336.6
1915 Female, age 42, unknown 1316.9
2223 Female, age 72, unknown 1292.2
2218 Male, age 76, both hemispheres 1269.1
1942 Male, age 51, unknown 1241.4
2021 Male, age 53, unknown 1223.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 760.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 760.2
Samples: 139

Max nTPM: 1683.1
Min nTPM: 327.2
Std nTPM: 218.3
Median nTPM: 747.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1683.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1444.8
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 1440.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1431.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 1191.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 1187.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1169.5
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 1169.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1159.1
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 1127.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1112.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 689.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 689.1
FF:10158-103A5 76 years, female 689.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 569.7
Pig sample Sample description nTPM
Midbrain
nTPM: 503.6
Samples: 4

Max nTPM: 596.8
Min nTPM: 361.4
Sample A Female 596.8
Sample B Female 466.2
Sample C Male 590.1
Sample D Male 361.4
Periaqueductal gray
nTPM: 326.9
Samples: 3

Max nTPM: 363.3
Min nTPM: 301.4
Sample B Female 316.0
Sample C Male 363.3
Sample D Male 301.4
Substantia nigra
nTPM: 569.7
Samples: 4

Max nTPM: 853.2
Min nTPM: 377.8
Sample A Female 853.2
Sample B Female 448.9
Sample C Male 598.7
Sample D Male 377.8
Superior colliculi
nTPM: 552.0
Samples: 4

Max nTPM: 640.6
Min nTPM: 474.8
Sample A Female 640.6
Sample B Female 490.6
Sample C Male 601.8
Sample D Male 474.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 738.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 738.8
Samples: 4

Max nTPM: 855.2
Min nTPM: 644.4
Sample A Male 855.2
Sample B Male 691.2
Sample C Female 644.4
Sample D Female 764.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.4
69873540 Antisense, RP_050512_01_E03, Mouse strain C57BL/6J (56 days, male) 9.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.