BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:69.7 nTPM
HPA:69.7 nTPM
GTEx:69.0 nTPM
FANTOM5:119.2 Scaled Tags Per Million

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 69.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 67.1
2288 Male, age 75, left hemisphere 69.8
2846 Female, age 79, unknown 68.8
2481 Female, age 94, left hemisphere 68.5
1854 Male, age 80, left hemisphere 67.7
1857 Female, age 85, left hemisphere 67.6
2290 Female, age 72, unknown 66.8
1781 Male, age 74, unknown 65.6
2289 Male, age 61, right hemisphere 62.2
Claustrum
nTPM: 65.3
1956 Male, age 74, unknown 68.7
2198 Male, age 80, both hemispheres 68.0
2491 Male, age 75, both hemispheres 67.9
2392 Female, age 94, both hemispheres 66.4
2196 Female, age 79, unknown 66.2
2292 Female, age 85, both hemispheres 64.2
2284 Female, age 91, both hemispheres 63.2
2568 Male, age 61, both hemispheres 62.6
2645 Female, age 72, unknown 60.7
Globus pallidus, externus
nTPM: 67.9
2772 Female, age 79, unknown 69.7
1996 Male, age 80, right hemisphere 69.3
2567 Female, age 72, unknown 68.5
2395 Male, age 75, both hemispheres 68.3
2646 Male, age 61, right hemisphere 63.6
Globus pallidus, internus
nTPM: 69.7
2287 Male, age 75, right hemisphere 79.2
2483 Female, age 94, right hemisphere 75.0
2778 Female, age 91, both hemispheres 68.5
2566 Female, age 72, unknown 67.1
2111 Female, age 85, right hemisphere 66.7
1818 Male, age 74, unknown 66.1
2037 Male, age 80, right hemisphere 65.4
Nucleus accumbens
nTPM: 67.8
2824 Male, age 61, right hemisphere 70.3
2391 Female, age 94, left hemisphere 70.1
2698 Female, age 72, unknown 69.9
2286 Male, age 75, left hemisphere 69.6
1856 Female, age 91, right hemisphere 69.5
1783 Male, age 74, unknown 66.4
1806 Female, age 85, left hemisphere 65.3
2732 Male, age 80, right hemisphere 61.1
Nucleus basalis of Meynert
nTPM: 65.8
2821 Male, age 75, both hemispheres 67.0
2393 Male, age 80, right hemisphere 66.3
2484 Female, age 94, left hemisphere 66.1
2569 Male, age 61, both hemispheres 63.7
Nucleus of the diagonal band
nTPM: 68.0
2775 Male, age 80, right hemisphere 70.2
1812 Female, age 91, both hemispheres 69.9
2029 Male, age 61, right hemisphere 67.3
2195 Female, age 85, both hemispheres 66.2
1979 Male, age 74, unknown 66.1
Olfactory tubercle
nTPM: 66.6
1846 Male, age 80, right hemisphere 70.6
1998 Female, age 91, both hemispheres 66.2
2856 Male, age 75, right hemisphere 65.5
2487 Female, age 94, left hemisphere 64.0
Putamen
nTPM: 67.6
2647 Male, age 75, left hemisphere 70.6
1838 Male, age 80, right hemisphere 69.3
1829 Male, age 74, unknown 68.5
1937 Female, age 91, right hemisphere 67.9
2482 Female, age 94, left hemisphere 67.6
2466 Female, age 79, unknown 66.6
2489 Female, age 72, unknown 63.0
Septal nuclei
nTPM: 65.7
2629 Female, age 94, right hemisphere 69.1
1960 Male, age 74, unknown 68.1
2031 Female, age 72, unknown 68.0
2009 Female, age 91, both hemispheres 66.0
2059 Female, age 85, both hemispheres 63.6
2199 Male, age 80, right hemisphere 63.4
2394 Male, age 61, left hemisphere 61.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 69.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 64.3
Samples: 246

Max nTPM: 118.3
Min nTPM: 28.4
Std nTPM: 14.8
Median nTPM: 62.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 118.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 116.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 115.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 115.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 114.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 111.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 110.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 98.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 98.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 91.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 90.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 66.3
Samples: 246

Max nTPM: 117.5
Min nTPM: 32.5
Std nTPM: 13.3
Median nTPM: 65.3
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 117.5
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 110.1
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 102.6
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 100.4
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 94.2
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 93.5
GTEX-11PRG-0011-R6b-SM-DO923 50-59 years, male 91.6
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 91.3
GTEX-13FLW-0011-R6b-SM-5L3EN 50-59 years, male 89.0
GTEX-12ZZX-0011-R6a-SM-5HL8L 40-49 years, female 88.9
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 88.4
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Brain - Putamen (basal ganglia)
Average nTPM: 69.0
Samples: 205

Max nTPM: 123.5
Min nTPM: 30.5
Std nTPM: 13.1
Median nTPM: 67.9
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 123.5
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 108.6
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 105.5
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 102.7
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 101.9
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 98.6
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 97.6
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 97.3
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 94.4
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 92.6
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 90.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 119.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 98.5
FF:10164-103B2 76 years, female 98.5
Globus pallidus
Scaled Tags Per Million: 77.4
FF:10161-103A8 76 years, female 87.0
FF:10175-103C4 60 years, female 67.8
Nucleus accumbens
Scaled Tags Per Million: 80.6
FF:10037-101F1 23-56 years, mixed 80.6
Putamen
Scaled Tags Per Million: 119.2
FF:10176-103C5 60 years, female 119.2

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