BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:5.2 nTPM
HPA:5.2 nTPM
GTEx:4.8 nTPM
FANTOM5:16.4 Scaled Tags Per Million
Pig:5.1 nTPM

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 5.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 4.8
2290 Female, age 72, unknown 5.0
2846 Female, age 79, unknown 5.0
1854 Male, age 80, left hemisphere 4.9
1857 Female, age 85, left hemisphere 4.8
1781 Male, age 74, unknown 4.7
2288 Male, age 75, left hemisphere 4.7
2289 Male, age 61, right hemisphere 4.7
2481 Female, age 94, left hemisphere 4.6
Claustrum
nTPM: 4.3
2196 Female, age 79, unknown 4.6
2198 Male, age 80, both hemispheres 4.5
2491 Male, age 75, both hemispheres 4.5
1956 Male, age 74, unknown 4.4
2392 Female, age 94, both hemispheres 4.4
2284 Female, age 91, both hemispheres 4.3
2568 Male, age 61, both hemispheres 4.3
2292 Female, age 85, both hemispheres 3.9
2645 Female, age 72, unknown 3.9
Globus pallidus, externus
nTPM: 4.0
2395 Male, age 75, both hemispheres 4.2
1996 Male, age 80, right hemisphere 4.0
2567 Female, age 72, unknown 4.0
2772 Female, age 79, unknown 3.9
2646 Male, age 61, right hemisphere 3.7
Globus pallidus, internus
nTPM: 4.2
2287 Male, age 75, right hemisphere 4.8
2483 Female, age 94, right hemisphere 4.2
2566 Female, age 72, unknown 4.2
2037 Male, age 80, right hemisphere 4.1
2111 Female, age 85, right hemisphere 4.1
2778 Female, age 91, both hemispheres 4.0
1818 Male, age 74, unknown 3.8
Nucleus accumbens
nTPM: 5.2
2824 Male, age 61, right hemisphere 6.6
1856 Female, age 91, right hemisphere 6.0
1783 Male, age 74, unknown 5.6
2698 Female, age 72, unknown 5.2
1806 Female, age 85, left hemisphere 4.9
2286 Male, age 75, left hemisphere 4.6
2732 Male, age 80, right hemisphere 4.5
2391 Female, age 94, left hemisphere 4.4
Nucleus basalis of Meynert
nTPM: 4.4
2393 Male, age 80, right hemisphere 4.8
2821 Male, age 75, both hemispheres 4.5
2484 Female, age 94, left hemisphere 4.4
2569 Male, age 61, both hemispheres 3.8
Nucleus of the diagonal band
nTPM: 4.9
1812 Female, age 91, both hemispheres 5.1
1979 Male, age 74, unknown 5.0
2029 Male, age 61, right hemisphere 4.9
2775 Male, age 80, right hemisphere 4.7
2195 Female, age 85, both hemispheres 4.6
Olfactory tubercle
nTPM: 4.7
1998 Female, age 91, both hemispheres 4.8
2856 Male, age 75, right hemisphere 4.8
2487 Female, age 94, left hemisphere 4.7
1846 Male, age 80, right hemisphere 4.5
Putamen
nTPM: 4.6
1838 Male, age 80, right hemisphere 6.1
1937 Female, age 91, right hemisphere 5.0
2482 Female, age 94, left hemisphere 4.5
1829 Male, age 74, unknown 4.4
2466 Female, age 79, unknown 4.4
2647 Male, age 75, left hemisphere 4.1
2489 Female, age 72, unknown 4.0
Septal nuclei
nTPM: 4.5
2009 Female, age 91, both hemispheres 4.7
2031 Female, age 72, unknown 4.7
2629 Female, age 94, right hemisphere 4.7
1960 Male, age 74, unknown 4.5
2394 Male, age 61, left hemisphere 4.5
2199 Male, age 80, right hemisphere 4.3
2059 Female, age 85, both hemispheres 4.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 4.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 2.8
Samples: 246

Max nTPM: 6.9
Min nTPM: 0.8
Std nTPM: 1.1
Median nTPM: 2.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 6.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 6.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 6.4
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 6.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 6.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 5.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 5.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 5.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 5.2
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 5.1
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 5.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 4.8
Samples: 246

Max nTPM: 16.4
Min nTPM: 0.5
Std nTPM: 1.9
Median nTPM: 4.6
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 16.4
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 11.2
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 10.1
GTEX-1JMLX-0011-R6b-SM-EXUT9 50-59 years, male 10.1
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 9.9
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 9.1
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 9.0
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 9.0
GTEX-1MA7X-0011-R6a-SM-EYYWR 60-69 years, male 8.5
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 8.3
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 8.2
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Brain - Putamen (basal ganglia)
Average nTPM: 2.8
Samples: 205

Max nTPM: 7.0
Min nTPM: 0.5
Std nTPM: 1.2
Median nTPM: 2.6
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 7.0
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 7.0
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 6.1
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 6.0
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 6.0
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 5.8
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 5.7
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 5.5
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 5.5
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 5.4
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 5.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 7.7
FF:10164-103B2 76 years, female 7.7
Globus pallidus
Scaled Tags Per Million: 3.3
FF:10175-103C4 60 years, female 3.9
FF:10161-103A8 76 years, female 2.7
Nucleus accumbens
Scaled Tags Per Million: 3.5
FF:10037-101F1 23-56 years, mixed 3.5
Putamen
Scaled Tags Per Million: 16.4
FF:10176-103C5 60 years, female 16.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 5.1
Pig sample Sample description nTPM
Caudate
nTPM: 4.5
Samples: 4

Max nTPM: 4.9
Min nTPM: 4.2
Sample A Female 4.9
Sample B Female 4.2
Sample C Male 4.8
Sample D Male 4.2
Putamen
nTPM: 4.7
Samples: 4

Max nTPM: 6.6
Min nTPM: 3.7
Sample A Female 3.7
Sample B Female 4.7
Sample C Male 6.6
Sample D Male 3.9
Septum
nTPM: 5.1
Samples: 4

Max nTPM: 7.1
Min nTPM: 4.1
Sample A Female 4.7
Sample B Female 4.3
Sample C Male 7.1
Sample D Male 4.1
Ventral pallidum
nTPM: 4.7
Samples: 4

Max nTPM: 6.2
Min nTPM: 3.7
Sample A Female 4.8
Sample B Female 4.0
Sample C Male 6.2
Sample D Male 3.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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