MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:33.1 nTPM
HPA:33.1 nTPM
GTEx:51.1 nTPM
FANTOM5:73.0 Scaled Tags Per Million
Pig:21.7 nTPM
Mouse:9.3 nTPM
Allen mouse:2.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 33.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.4
2219 Male, age 76, both hemispheres 30.1
1827 Male, age 72, unknown 28.2
1870 Female, age 42, unknown 28.1
2586 Male, age 75, left hemisphere 28.1
2828 Female, age 72, unknown 28.1
1833 Male, age 53, unknown 26.7
2666 Male, age 74, left hemisphere 26.4
1830 Male, age 51, unknown 26.3
2411 Female, age 72, unknown 26.1
2019 Male, age 18, unknown 25.8
Dorsal raphe nucleus
nTPM: 27.7
2298 Female, age 72, unknown 29.1
2750 Male, age 76, both hemispheres 28.3
1828 Male, age 53, unknown 27.7
2047 Male, age 72, unknown 27.5
2016 Female, age 72, unknown 26.0
Inferior colliculus
nTPM: 28.1
2849 Male, age 72, unknown 29.5
2097 Female, age 72, unknown 28.7
1890 Male, age 53, unknown 27.5
1848 Female, age 42, unknown 26.8
Median raphe nucleus
nTPM: 33.1
2220 Male, age 76, midline 33.1
Pedunculopontine tegmental nucleus
nTPM: 29.2
2338 Male, age 61, both hemispheres 30.2
2334 Male, age 80, both hemispheres 29.7
1921 Female, age 85, both hemispheres 27.8
Periaquaductal grey, anterior
nTPM: 28.6
1795 Male, age 51, unknown 29.6
2502 Female, age 75, unknown 28.3
1947 Male, age 18, unknown 27.8
Periaquaductal grey, dorsal
nTPM: 27.4
2850 Male, age 76, both hemispheres 30.5
1840 Male, age 53, unknown 27.5
2464 Female, age 72, unknown 26.0
1831 Male, age 72, unknown 25.5
Periaquaductal grey, lateral
nTPM: 27.7
2140 Male, age 76, both hemispheres 29.1
2272 Male, age 74, both hemispheres 28.1
2053 Male, age 18, unknown 25.9
Pretectal area
nTPM: 28.1
2667 Female, age 75, unknown 29.2
2007 Male, age 72, unknown 28.9
2224 Female, age 72, unknown 28.8
1816 Male, age 51, unknown 28.6
1817 Female, age 42, unknown 28.5
2825 Male, age 18, unknown 28.2
2273 Male, age 74, both hemispheres 28.0
1944 Female, age 72, unknown 27.9
1815 Male, age 53, unknown 27.2
2316 Male, age 76, right hemisphere 26.7
2407 Male, age 75, both hemispheres 26.7
Red nucleus
nTPM: 28.2
2227 Male, age 72, unknown 29.6
2503 Female, age 72, unknown 29.4
2725 Female, age 75, unknown 29.4
2769 Male, age 72, unknown 29.2
1954 Female, age 42, unknown 28.9
2785 Male, age 18, unknown 28.6
1865 Male, age 51, unknown 27.9
2588 Male, age 74, left hemisphere 27.7
1904 Male, age 53, unknown 27.6
1821 Female, age 72, unknown 26.8
2584 Male, age 75, left hemisphere 26.8
2823 Male, age 76, right hemisphere 26.8
Substantia nigra
nTPM: 27.9
1916 Female, age 42, unknown 33.4
2699 Male, age 18, unknown 30.0
1941 Male, age 53, unknown 28.5
1851 Male, age 51, unknown 28.3
1889 Female, age 72, unknown 28.2
2665 Male, age 74, both hemispheres 27.6
2241 Male, age 72, unknown 26.5
2583 Male, age 75, right hemisphere 26.1
2409 Female, age 72, unknown 25.4
2590 Female, age 75, unknown 25.3
Superior colliculus
nTPM: 27.1
1796 Male, age 53, unknown 30.2
2261 Male, age 18, unknown 28.6
2087 Female, age 72, unknown 27.9
2668 Female, age 75, unknown 27.7
1913 Female, age 42, unknown 26.8
1839 Male, age 51, unknown 26.4
2587 Male, age 74, left hemisphere 26.3
1895 Male, age 76, right hemisphere 25.8
2664 Male, age 75, both hemispheres 25.8
1995 Male, age 72, unknown 25.5
Ventral tegmental area
nTPM: 28.6
2218 Male, age 76, both hemispheres 30.5
2223 Female, age 72, unknown 29.4
1915 Female, age 42, unknown 29.3
1942 Male, age 51, unknown 28.4
2021 Male, age 53, unknown 27.0
2410 Female, age 72, unknown 26.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 51.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 51.1
Samples: 139

Max nTPM: 119.3
Min nTPM: 20.4
Std nTPM: 14.6
Median nTPM: 50.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 119.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 92.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 86.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 79.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 77.8
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 76.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 76.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 75.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 74.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 74.1
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 74.1
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 73.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 73.0
FF:10158-103A5 76 years, female 73.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 21.7
Pig sample Sample description nTPM
Midbrain
nTPM: 20.5
Samples: 4

Max nTPM: 21.2
Min nTPM: 19.3
Sample A Female 20.7
Sample B Female 19.3
Sample C Male 20.9
Sample D Male 21.2
Periaqueductal gray
nTPM: 16.7
Samples: 3

Max nTPM: 19.8
Min nTPM: 13.7
Sample B Female 13.7
Sample C Male 19.8
Sample D Male 16.5
Substantia nigra
nTPM: 18.9
Samples: 4

Max nTPM: 26.4
Min nTPM: 13.8
Sample A Female 26.4
Sample B Female 13.8
Sample C Male 20.7
Sample D Male 14.7
Superior colliculi
nTPM: 21.7
Samples: 4

Max nTPM: 26.4
Min nTPM: 15.3
Sample A Female 26.4
Sample B Female 15.3
Sample C Male 22.7
Sample D Male 22.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 9.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.3
Samples: 4

Max nTPM: 10.8
Min nTPM: 8.1
Sample A Male 10.8
Sample B Male 9.0
Sample C Female 9.2
Sample D Female 8.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.3
70545913 Antisense, RP_050623_03_B10, Mouse strain C57BL/6J (56 days, male) 2.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.