MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:18.4 nTPM
HPA:18.4 nTPM
GTEx:28.5 nTPM
FANTOM5:42.8 Scaled Tags Per Million
Pig:27.8 nTPM
Mouse:61.9 nTPM
Allen mouse:4.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 18.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.3
2411 Female, age 72, unknown 17.8
1870 Female, age 42, unknown 17.5
2586 Male, age 75, left hemisphere 16.9
1830 Male, age 51, unknown 16.5
1827 Male, age 72, unknown 16.3
2019 Male, age 18, unknown 16.1
2219 Male, age 76, both hemispheres 15.9
2666 Male, age 74, left hemisphere 15.6
1833 Male, age 53, unknown 15.4
2828 Female, age 72, unknown 15.2
Dorsal raphe nucleus
nTPM: 17.5
1828 Male, age 53, unknown 20.5
2047 Male, age 72, unknown 18.6
2298 Female, age 72, unknown 17.4
2750 Male, age 76, both hemispheres 15.7
2016 Female, age 72, unknown 15.1
Inferior colliculus
nTPM: 15.1
2097 Female, age 72, unknown 15.5
1848 Female, age 42, unknown 15.3
1890 Male, age 53, unknown 14.8
2849 Male, age 72, unknown 14.7
Median raphe nucleus
nTPM: 15.6
2220 Male, age 76, midline 15.6
Pedunculopontine tegmental nucleus
nTPM: 16.6
2334 Male, age 80, both hemispheres 18.0
1921 Female, age 85, both hemispheres 16.4
2338 Male, age 61, both hemispheres 15.3
Periaquaductal grey, anterior
nTPM: 15.9
1947 Male, age 18, unknown 16.5
1795 Male, age 51, unknown 15.6
2502 Female, age 75, unknown 15.5
Periaquaductal grey, dorsal
nTPM: 13.2
1840 Male, age 53, unknown 14.6
2464 Female, age 72, unknown 13.8
2850 Male, age 76, both hemispheres 12.5
1831 Male, age 72, unknown 12.2
Periaquaductal grey, lateral
nTPM: 14.4
2272 Male, age 74, both hemispheres 16.3
2053 Male, age 18, unknown 13.7
2140 Male, age 76, both hemispheres 13.2
Pretectal area
nTPM: 15.7
2007 Male, age 72, unknown 17.7
2407 Male, age 75, both hemispheres 17.1
1817 Female, age 42, unknown 16.8
2667 Female, age 75, unknown 16.5
1816 Male, age 51, unknown 15.7
1944 Female, age 72, unknown 15.2
2825 Male, age 18, unknown 15.2
2224 Female, age 72, unknown 14.9
2273 Male, age 74, both hemispheres 14.9
2316 Male, age 76, right hemisphere 14.7
1815 Male, age 53, unknown 14.4
Red nucleus
nTPM: 17.3
1821 Female, age 72, unknown 20.4
1954 Female, age 42, unknown 18.6
2769 Male, age 72, unknown 18.5
2227 Male, age 72, unknown 18.2
2503 Female, age 72, unknown 18.1
2588 Male, age 74, left hemisphere 18.0
1904 Male, age 53, unknown 17.3
2785 Male, age 18, unknown 16.8
2725 Female, age 75, unknown 16.0
1865 Male, age 51, unknown 15.9
2584 Male, age 75, left hemisphere 15.6
2823 Male, age 76, right hemisphere 14.5
Substantia nigra
nTPM: 18.4
1916 Female, age 42, unknown 22.6
1851 Male, age 51, unknown 20.5
1941 Male, age 53, unknown 19.0
2409 Female, age 72, unknown 18.3
2699 Male, age 18, unknown 18.1
1889 Female, age 72, unknown 17.9
2590 Female, age 75, unknown 17.5
2241 Male, age 72, unknown 17.2
2665 Male, age 74, both hemispheres 17.0
2583 Male, age 75, right hemisphere 15.9
Superior colliculus
nTPM: 15.2
2668 Female, age 75, unknown 16.7
2587 Male, age 74, left hemisphere 16.6
2261 Male, age 18, unknown 16.5
1839 Male, age 51, unknown 15.8
1796 Male, age 53, unknown 15.4
1895 Male, age 76, right hemisphere 15.1
1913 Female, age 42, unknown 15.0
2087 Female, age 72, unknown 14.7
2664 Male, age 75, both hemispheres 13.3
1995 Male, age 72, unknown 13.1
Ventral tegmental area
nTPM: 17.3
2410 Female, age 72, unknown 19.8
1915 Female, age 42, unknown 19.1
2218 Male, age 76, both hemispheres 17.9
2223 Female, age 72, unknown 16.3
1942 Male, age 51, unknown 16.0
2021 Male, age 53, unknown 14.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 28.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.5
Samples: 139

Max nTPM: 49.5
Min nTPM: 15.7
Std nTPM: 6.1
Median nTPM: 27.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 49.5
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 45.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 44.7
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 41.1
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 41.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 39.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 38.9
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 38.8
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 38.0
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 37.9
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 37.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 42.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 42.8
FF:10158-103A5 76 years, female 42.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 27.8
Pig sample Sample description nTPM
Midbrain
nTPM: 27.6
Samples: 4

Max nTPM: 33.8
Min nTPM: 21.4
Sample A Female 30.6
Sample B Female 21.4
Sample C Male 33.8
Sample D Male 24.4
Periaqueductal gray
nTPM: 21.1
Samples: 3

Max nTPM: 24.4
Min nTPM: 19.3
Sample B Female 19.6
Sample C Male 24.4
Sample D Male 19.3
Substantia nigra
nTPM: 26.1
Samples: 4

Max nTPM: 31.0
Min nTPM: 20.0
Sample A Female 31.0
Sample B Female 20.0
Sample C Male 30.7
Sample D Male 22.8
Superior colliculi
nTPM: 27.8
Samples: 4

Max nTPM: 34.3
Min nTPM: 20.7
Sample A Female 28.7
Sample B Female 20.7
Sample C Male 34.3
Sample D Male 27.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 61.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 61.9
Samples: 4

Max nTPM: 67.2
Min nTPM: 52.8
Sample A Male 52.8
Sample B Male 63.9
Sample C Female 67.2
Sample D Female 63.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.1
532695 Antisense, RP_040825_01_E06, Mouse strain C57BL/6J (56 days, male) 4.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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