MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:17.5 nTPM
HPA:17.5 nTPM
GTEx:17.5 nTPM
FANTOM5:79.0 Scaled Tags Per Million
Pig:26.9 nTPM
Mouse:3.6 nTPM
Allen mouse:10.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 17.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 13.9
2666 Male, age 74, left hemisphere 15.7
2828 Female, age 72, unknown 14.8
1830 Male, age 51, unknown 14.6
1870 Female, age 42, unknown 14.1
2019 Male, age 18, unknown 14.1
1833 Male, age 53, unknown 14.0
2411 Female, age 72, unknown 13.6
1827 Male, age 72, unknown 13.5
2586 Male, age 75, left hemisphere 12.5
2219 Male, age 76, both hemispheres 12.1
Dorsal raphe nucleus
nTPM: 14.6
2298 Female, age 72, unknown 15.8
2016 Female, age 72, unknown 15.1
1828 Male, age 53, unknown 14.7
2750 Male, age 76, both hemispheres 14.4
2047 Male, age 72, unknown 13.1
Inferior colliculus
nTPM: 13.9
2097 Female, age 72, unknown 14.1
1890 Male, age 53, unknown 14.0
2849 Male, age 72, unknown 14.0
1848 Female, age 42, unknown 13.6
Median raphe nucleus
nTPM: 15.3
2220 Male, age 76, midline 15.3
Pedunculopontine tegmental nucleus
nTPM: 17.5
2338 Male, age 61, both hemispheres 24.4
2334 Male, age 80, both hemispheres 15.6
1921 Female, age 85, both hemispheres 12.6
Periaquaductal grey, anterior
nTPM: 13.4
1795 Male, age 51, unknown 14.0
1947 Male, age 18, unknown 13.8
2502 Female, age 75, unknown 12.4
Periaquaductal grey, dorsal
nTPM: 15.3
1831 Male, age 72, unknown 17.1
2850 Male, age 76, both hemispheres 16.6
1840 Male, age 53, unknown 13.8
2464 Female, age 72, unknown 13.8
Periaquaductal grey, lateral
nTPM: 15.1
2140 Male, age 76, both hemispheres 16.2
2272 Male, age 74, both hemispheres 15.0
2053 Male, age 18, unknown 14.2
Pretectal area
nTPM: 14.5
2316 Male, age 76, right hemisphere 16.3
2407 Male, age 75, both hemispheres 16.2
2224 Female, age 72, unknown 15.2
2273 Male, age 74, both hemispheres 14.7
2825 Male, age 18, unknown 14.2
1815 Male, age 53, unknown 14.1
1944 Female, age 72, unknown 14.1
2007 Male, age 72, unknown 13.9
1817 Female, age 42, unknown 13.8
2667 Female, age 75, unknown 13.6
1816 Male, age 51, unknown 13.0
Red nucleus
nTPM: 14.4
2503 Female, age 72, unknown 15.4
1865 Male, age 51, unknown 15.3
2725 Female, age 75, unknown 15.3
2823 Male, age 76, right hemisphere 14.7
1904 Male, age 53, unknown 14.5
2227 Male, age 72, unknown 14.5
2785 Male, age 18, unknown 14.2
2769 Male, age 72, unknown 14.1
1954 Female, age 42, unknown 14.0
1821 Female, age 72, unknown 13.9
2584 Male, age 75, left hemisphere 13.8
2588 Male, age 74, left hemisphere 13.1
Substantia nigra
nTPM: 15.9
2590 Female, age 75, unknown 19.8
2665 Male, age 74, both hemispheres 18.6
2699 Male, age 18, unknown 18.4
1851 Male, age 51, unknown 15.7
2583 Male, age 75, right hemisphere 15.5
1916 Female, age 42, unknown 15.2
2241 Male, age 72, unknown 14.9
1941 Male, age 53, unknown 14.4
1889 Female, age 72, unknown 13.6
2409 Female, age 72, unknown 13.1
Superior colliculus
nTPM: 14.5
1913 Female, age 42, unknown 16.5
2587 Male, age 74, left hemisphere 16.4
1995 Male, age 72, unknown 16.1
1796 Male, age 53, unknown 14.9
2664 Male, age 75, both hemispheres 14.4
1839 Male, age 51, unknown 13.9
2087 Female, age 72, unknown 13.8
2668 Female, age 75, unknown 13.2
2261 Male, age 18, unknown 13.0
1895 Male, age 76, right hemisphere 12.9
Ventral tegmental area
nTPM: 15.5
2021 Male, age 53, unknown 17.6
2218 Male, age 76, both hemispheres 16.5
1915 Female, age 42, unknown 16.3
1942 Male, age 51, unknown 14.7
2223 Female, age 72, unknown 14.0
2410 Female, age 72, unknown 13.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 17.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.5
Samples: 139

Max nTPM: 100.6
Min nTPM: 2.2
Std nTPM: 16.3
Median nTPM: 13.0
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 100.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 95.5
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 68.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 61.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 59.2
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 53.8
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 48.2
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 46.8
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 44.7
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 44.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 43.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 79.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 79.0
FF:10158-103A5 76 years, female 79.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 26.9
Pig sample Sample description nTPM
Midbrain
nTPM: 18.9
Samples: 4

Max nTPM: 28.2
Min nTPM: 10.1
Sample A Female 28.2
Sample B Female 25.1
Sample C Male 10.1
Sample D Male 12.1
Periaqueductal gray
nTPM: 26.9
Samples: 3

Max nTPM: 32.1
Min nTPM: 21.4
Sample B Female 27.1
Sample C Male 32.1
Sample D Male 21.4
Substantia nigra
nTPM: 22.5
Samples: 4

Max nTPM: 23.9
Min nTPM: 21.2
Sample A Female 21.5
Sample B Female 23.9
Sample C Male 23.3
Sample D Male 21.2
Superior colliculi
nTPM: 14.1
Samples: 4

Max nTPM: 18.0
Min nTPM: 10.1
Sample A Female 18.0
Sample B Female 10.1
Sample C Male 12.0
Sample D Male 16.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 3.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.6
Samples: 4

Max nTPM: 3.8
Min nTPM: 3.1
Sample A Male 3.7
Sample B Male 3.8
Sample C Female 3.1
Sample D Female 3.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.6
68443122 Antisense, RP_050111_01_D07, Mouse strain C57BL/6J (56 days, male) 10.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.