BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:3.7 nTPM
HPA:3.7 nTPM
GTEx:3.4 nTPM
FANTOM5:28.7 Scaled Tags Per Million
Mouse:15.8 nTPM
Allen mouse:0.4 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA053085
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 3.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 3.6
2288 Male, age 75, left hemisphere 4.6
2481 Female, age 94, left hemisphere 4.0
2289 Male, age 61, right hemisphere 3.7
2846 Female, age 79, unknown 3.7
2290 Female, age 72, unknown 3.6
1857 Female, age 85, left hemisphere 3.5
1854 Male, age 80, left hemisphere 3.3
1781 Male, age 74, unknown 2.4
Claustrum
nTPM: 2.7
1956 Male, age 74, unknown 3.1
2568 Male, age 61, both hemispheres 3.0
2196 Female, age 79, unknown 2.9
2392 Female, age 94, both hemispheres 2.9
2284 Female, age 91, both hemispheres 2.6
2198 Male, age 80, both hemispheres 2.5
2645 Female, age 72, unknown 2.4
2292 Female, age 85, both hemispheres 2.2
2491 Male, age 75, both hemispheres 2.2
Globus pallidus, externus
nTPM: 3.3
1996 Male, age 80, right hemisphere 4.0
2567 Female, age 72, unknown 3.6
2772 Female, age 79, unknown 3.3
2395 Male, age 75, both hemispheres 2.9
2646 Male, age 61, right hemisphere 2.8
Globus pallidus, internus
nTPM: 3.7
1818 Male, age 74, unknown 4.7
2111 Female, age 85, right hemisphere 3.9
2566 Female, age 72, unknown 3.8
2037 Male, age 80, right hemisphere 3.7
2287 Male, age 75, right hemisphere 3.7
2778 Female, age 91, both hemispheres 3.7
2483 Female, age 94, right hemisphere 2.7
Nucleus accumbens
nTPM: 3.6
2286 Male, age 75, left hemisphere 4.3
2391 Female, age 94, left hemisphere 4.1
2698 Female, age 72, unknown 3.8
1856 Female, age 91, right hemisphere 3.6
1783 Male, age 74, unknown 3.5
2824 Male, age 61, right hemisphere 3.4
2732 Male, age 80, right hemisphere 3.1
1806 Female, age 85, left hemisphere 2.9
Nucleus basalis of Meynert
nTPM: 3.2
2393 Male, age 80, right hemisphere 3.5
2484 Female, age 94, left hemisphere 3.2
2821 Male, age 75, both hemispheres 3.2
2569 Male, age 61, both hemispheres 2.7
Nucleus of the diagonal band
nTPM: 2.7
1979 Male, age 74, unknown 3.3
2195 Female, age 85, both hemispheres 2.9
2029 Male, age 61, right hemisphere 2.5
2775 Male, age 80, right hemisphere 2.5
1812 Female, age 91, both hemispheres 2.0
Olfactory tubercle
nTPM: 2.7
2856 Male, age 75, right hemisphere 3.1
1846 Male, age 80, right hemisphere 2.9
2487 Female, age 94, left hemisphere 2.4
1998 Female, age 91, both hemispheres 2.2
Putamen
nTPM: 3.6
2482 Female, age 94, left hemisphere 4.1
1829 Male, age 74, unknown 3.9
1838 Male, age 80, right hemisphere 3.8
2489 Female, age 72, unknown 3.5
1937 Female, age 91, right hemisphere 3.3
2647 Male, age 75, left hemisphere 3.3
2466 Female, age 79, unknown 3.0
Septal nuclei
nTPM: 2.9
2199 Male, age 80, right hemisphere 3.8
2629 Female, age 94, right hemisphere 3.3
2059 Female, age 85, both hemispheres 3.0
2394 Male, age 61, left hemisphere 2.9
2009 Female, age 91, both hemispheres 2.6
1960 Male, age 74, unknown 2.3
2031 Female, age 72, unknown 2.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 3.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 3.4
Samples: 246

Max nTPM: 6.1
Min nTPM: 1.8
Std nTPM: 0.7
Median nTPM: 3.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 6.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 6.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 5.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 5.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 5.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 5.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 5.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 5.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 5.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 5.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 4.9
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 2.9
Samples: 246

Max nTPM: 6.7
Min nTPM: 1.1
Std nTPM: 0.7
Median nTPM: 2.9
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 6.7
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 6.3
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 5.2
GTEX-1GZHY-0011-R6a-SM-9OSWL 50-59 years, female 5.2
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 4.7
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 4.6
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 4.6
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 4.5
GTEX-139TT-0011-R6b-SM-5J2ON 60-69 years, male 4.4
GTEX-1I1GQ-0011-R6b-SM-CE6SE 50-59 years, male 4.3
GTEX-NPJ8-0011-R6a-SM-2HMKB 40-49 years, male 4.2
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 3.1
Samples: 205

Max nTPM: 6.3
Min nTPM: 1.3
Std nTPM: 0.7
Median nTPM: 3.1
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 6.3
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 5.1
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 5.1
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 4.7
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 4.6
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 4.5
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 4.4
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 4.4
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 4.3
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 4.3
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 4.3
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 28.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 28.7
FF:10164-103B2 76 years, female 28.7
Globus pallidus
Scaled Tags Per Million: 25.5
FF:10161-103A8 76 years, female 29.8
FF:10175-103C4 60 years, female 21.3
Nucleus accumbens
Scaled Tags Per Million: 27.9
FF:10037-101F1 23-56 years, mixed 27.9
Putamen
Scaled Tags Per Million: 23.8
FF:10176-103C5 60 years, female 23.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 15.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 15.9
Samples: 4

Max nTPM: 17.2
Min nTPM: 14.9
Sample A Male 15.9
Sample B Male 15.4
Sample C Female 14.9
Sample D Female 17.2
Septum
nTPM: 10.3
Samples: 4

Max nTPM: 11.7
Min nTPM: 8.8
Sample A Male 10.7
Sample B Male 11.7
Sample C Female 9.8
Sample D Female 8.8
Ventral forebrain
nTPM: 12.1
Samples: 4

Max nTPM: 12.8
Min nTPM: 11.0
Sample A Male 11.0
Sample B Male 12.7
Sample C Female 11.8
Sample D Female 12.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.4
69288602 Antisense, RP_050407_01_C10, Mouse strain C57BL/6J (56 days, male) 0.4
Pallidum
Expression energy: 0.3
69288602 Antisense, RP_050407_01_C10, Mouse strain C57BL/6J (56 days, male) 0.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.