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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:142.5 nTPM
HPA:142.5 nTPM
GTEx:228.3 nTPM
FANTOM5:34.3 Scaled Tags Per Million
Pig:165.3 nTPM
Mouse:674.8 nTPM
Allen mouse:12.2 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 142.5
Sample id Sample description nTPM
Amygdala
nTPM: 41.0
2517 Female, age 94, left hemisphere 101.8
2514 Male, age 75, right hemisphere 56.5
1987 Female, age 91, left hemisphere 46.7
2695 Female, age 67, right hemisphere 0.0
2814 Male, age 76, right hemisphere 0.0
Basal amygdala
nTPM: 142.5
2243 Female, age 91, right hemisphere 257.8
2827 Female, age 67, right hemisphere 183.6
2609 Male, age 75, right hemisphere 145.1
2685 Female, age 94, left hemisphere 136.5
2110 Male, age 80, left hemisphere 93.1
1955 Male, age 76, both hemispheres 39.0
Central amygdala
nTPM: 56.9
2239 Male, age 80, left hemisphere 127.7
2826 Female, age 94, left hemisphere 91.4
2515 Male, age 75, right hemisphere 51.7
2701 Female, age 91, right hemisphere 13.9
1905 Male, age 76, both hemispheres 0.0
Corticomedial amygdala
nTPM: 124.0
2829 Male, age 80, left hemisphere 178.3
2535 Female, age 67, right hemisphere 170.4
2242 Female, age 91, right hemisphere 127.3
2428 Male, age 75, right hemisphere 121.5
2429 Female, age 94, left hemisphere 97.3
2240 Male, age 76, both hemispheres 49.2
Lateral amygdala
nTPM: 77.3
2534 Female, age 94, left hemisphere 105.0
2255 Female, age 91, right hemisphere 96.4
2830 Female, age 67, right hemisphere 94.2
2516 Male, age 75, right hemisphere 76.4
2256 Male, age 80, left hemisphere 74.7
1883 Male, age 76, both hemispheres 16.9
Stria terminalis, bed nucleus
nTPM: 56.8
2486 Female, age 94, both hemispheres 99.9
1974 Female, age 91, both hemispheres 70.5
2201 Male, age 74, unknown 0.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 228.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 228.3
Samples: 152

Max nTPM: 665.5
Min nTPM: 6.0
Std nTPM: 123.9
Median nTPM: 201.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 665.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 544.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 540.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 492.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 485.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 469.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 448.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 439.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 434.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 426.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 420.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 415.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 409.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 407.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 404.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 398.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 396.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 396.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 396.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 391.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 386.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 383.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 380.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 379.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 379.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 367.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 366.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 364.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 357.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 334.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 326.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 323.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 322.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 320.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 318.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 318.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 302.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 302.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 300.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 298.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 298.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 296.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 296.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 294.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 291.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 290.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 290.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 288.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 285.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 283.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 276.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 275.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 267.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 264.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 258.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 257.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 256.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 255.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 249.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 249.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 246.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 243.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 241.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 240.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 239.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 238.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 238.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 237.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 234.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 233.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 227.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 221.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 214.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 209.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 207.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 204.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 198.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 196.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 195.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 194.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 194.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 190.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 190.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 183.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 182.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 179.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 174.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 172.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 172.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 171.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 171.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 170.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 168.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 167.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 165.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 162.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 162.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 160.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 155.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 154.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 152.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 152.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 150.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 150.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 150.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 148.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 147.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 146.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 145.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 144.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 143.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 139.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 137.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 137.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 132.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 131.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 129.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 123.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 120.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 118.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 118.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 117.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 117.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 114.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 113.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 112.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 110.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 110.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 110.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 107.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 103.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 102.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 97.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 94.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 90.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 87.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 87.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 85.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 84.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 78.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 75.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 74.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 74.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 71.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 69.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 49.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 48.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 47.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 45.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 14.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 14.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 6.0
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 34.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 34.3
FF:10151-102I7 76 years, female 34.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 165.3
Pig sample Sample description nTPM
Amygdala
nTPM: 165.3
Samples: 4

Max nTPM: 202.8
Min nTPM: 108.0
Sample A Female 202.8
Sample B Female 108.0
Sample C Male 195.2
Sample D Male 155.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 674.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 674.8
Samples: 4

Max nTPM: 747.0
Min nTPM: 586.0
Sample A Male 586.0
Sample B Male 711.2
Sample C Female 747.0
Sample D Female 654.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 12.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 12.2
74579467 Antisense, RP_060215_01_D04, Mouse strain C57BL/6J (56 days, male) 17.6
71212512 Antisense, RP_050816_03_D06, Mouse strain C57BL/6J (56 days, male) 6.9
73636031 Antisense, RP_050816_03_D06, Mouse strain C57BL/6J (56 days, male) 4.8

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