MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:14.0 nTPM
HPA:14.0 nTPM
GTEx:12.0 nTPM
FANTOM5:12.8 Scaled Tags Per Million
Pig:6.4 nTPM
Mouse:11.4 nTPM
Allen mouse:1.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 14.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 13.0
2586 Male, age 75, left hemisphere 15.3
2828 Female, age 72, unknown 14.7
1827 Male, age 72, unknown 13.7
2666 Male, age 74, left hemisphere 13.2
2219 Male, age 76, both hemispheres 12.8
1833 Male, age 53, unknown 12.6
1870 Female, age 42, unknown 12.6
1830 Male, age 51, unknown 12.2
2019 Male, age 18, unknown 11.7
2411 Female, age 72, unknown 11.7
Dorsal raphe nucleus
nTPM: 13.4
2016 Female, age 72, unknown 14.2
2047 Male, age 72, unknown 14.2
1828 Male, age 53, unknown 13.3
2298 Female, age 72, unknown 13.3
2750 Male, age 76, both hemispheres 11.7
Inferior colliculus
nTPM: 13.9
2849 Male, age 72, unknown 15.2
1848 Female, age 42, unknown 13.6
2097 Female, age 72, unknown 13.6
1890 Male, age 53, unknown 13.3
Median raphe nucleus
nTPM: 11.3
2220 Male, age 76, midline 11.3
Pedunculopontine tegmental nucleus
nTPM: 11.9
1921 Female, age 85, both hemispheres 12.4
2334 Male, age 80, both hemispheres 11.6
2338 Male, age 61, both hemispheres 11.6
Periaquaductal grey, anterior
nTPM: 13.4
2502 Female, age 75, unknown 13.7
1795 Male, age 51, unknown 13.4
1947 Male, age 18, unknown 13.0
Periaquaductal grey, dorsal
nTPM: 14.0
1840 Male, age 53, unknown 14.9
2464 Female, age 72, unknown 14.1
1831 Male, age 72, unknown 13.7
2850 Male, age 76, both hemispheres 13.5
Periaquaductal grey, lateral
nTPM: 13.8
2053 Male, age 18, unknown 14.2
2140 Male, age 76, both hemispheres 13.7
2272 Male, age 74, both hemispheres 13.6
Pretectal area
nTPM: 13.5
2273 Male, age 74, both hemispheres 14.5
1816 Male, age 51, unknown 14.1
2407 Male, age 75, both hemispheres 14.0
2667 Female, age 75, unknown 13.9
2825 Male, age 18, unknown 13.5
2316 Male, age 76, right hemisphere 13.4
1944 Female, age 72, unknown 13.2
1815 Male, age 53, unknown 13.1
1817 Female, age 42, unknown 13.1
2224 Female, age 72, unknown 12.9
2007 Male, age 72, unknown 12.8
Red nucleus
nTPM: 12.4
2588 Male, age 74, left hemisphere 13.2
2725 Female, age 75, unknown 13.2
2584 Male, age 75, left hemisphere 13.1
1954 Female, age 42, unknown 12.7
2785 Male, age 18, unknown 12.6
2503 Female, age 72, unknown 12.5
2769 Male, age 72, unknown 12.5
1904 Male, age 53, unknown 12.2
1821 Female, age 72, unknown 11.9
1865 Male, age 51, unknown 11.9
2227 Male, age 72, unknown 11.7
2823 Male, age 76, right hemisphere 11.4
Substantia nigra
nTPM: 12.9
2699 Male, age 18, unknown 14.7
2665 Male, age 74, both hemispheres 13.6
1941 Male, age 53, unknown 13.4
2583 Male, age 75, right hemisphere 13.0
1916 Female, age 42, unknown 12.9
1851 Male, age 51, unknown 12.8
2409 Female, age 72, unknown 12.7
1889 Female, age 72, unknown 12.3
2590 Female, age 75, unknown 12.1
2241 Male, age 72, unknown 12.0
Superior colliculus
nTPM: 13.7
2664 Male, age 75, both hemispheres 16.8
1839 Male, age 51, unknown 14.1
1895 Male, age 76, right hemisphere 13.8
1995 Male, age 72, unknown 13.7
2087 Female, age 72, unknown 13.6
1796 Male, age 53, unknown 13.2
2261 Male, age 18, unknown 13.2
1913 Female, age 42, unknown 12.9
2668 Female, age 75, unknown 12.9
2587 Male, age 74, left hemisphere 12.6
Ventral tegmental area
nTPM: 12.7
2021 Male, age 53, unknown 13.4
1915 Female, age 42, unknown 13.3
1942 Male, age 51, unknown 13.1
2223 Female, age 72, unknown 12.3
2410 Female, age 72, unknown 12.3
2218 Male, age 76, both hemispheres 12.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 12.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.0
Samples: 139

Max nTPM: 21.9
Min nTPM: 5.9
Std nTPM: 3.1
Median nTPM: 11.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 21.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 21.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 20.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 19.2
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 19.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 19.0
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 17.9
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 17.8
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 17.7
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 17.3
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 16.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 12.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 12.8
FF:10158-103A5 76 years, female 12.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 6.4
Pig sample Sample description nTPM
Midbrain
nTPM: 6.1
Samples: 4

Max nTPM: 7.8
Min nTPM: 4.4
Sample A Female 6.9
Sample B Female 7.8
Sample C Male 4.4
Sample D Male 5.3
Periaqueductal gray
nTPM: 6.2
Samples: 3

Max nTPM: 7.6
Min nTPM: 5.4
Sample B Female 7.6
Sample C Male 5.4
Sample D Male 5.6
Substantia nigra
nTPM: 6.0
Samples: 4

Max nTPM: 7.7
Min nTPM: 5.4
Sample A Female 5.5
Sample B Female 7.7
Sample C Male 5.5
Sample D Male 5.4
Superior colliculi
nTPM: 6.4
Samples: 4

Max nTPM: 10.4
Min nTPM: 4.1
Sample A Female 6.3
Sample B Female 10.4
Sample C Male 4.1
Sample D Male 4.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 11.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 11.4
Samples: 4

Max nTPM: 13.1
Min nTPM: 7.6
Sample A Male 13.1
Sample B Male 12.8
Sample C Female 7.6
Sample D Female 12.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.3
69549639 Antisense, RP_050309_01_H03, Mouse strain C57BL/6J (56 days, male) 1.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.