BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:1.7 nTPM
HPA:1.7 nTPM
GTEx:0.9 nTPM
FANTOM5:3.0 Scaled Tags Per Million
Pig:1.8 nTPM
Mouse:0.1 nTPM
Allen mouse:0.8 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 1.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 1.1
1781 Male, age 74, unknown 1.2
1854 Male, age 80, left hemisphere 1.2
1857 Female, age 85, left hemisphere 1.2
2481 Female, age 94, left hemisphere 1.2
2846 Female, age 79, unknown 1.2
2288 Male, age 75, left hemisphere 1.1
2289 Male, age 61, right hemisphere 1.0
2290 Female, age 72, unknown 1.0
Claustrum
nTPM: 1.2
2491 Male, age 75, both hemispheres 1.5
2198 Male, age 80, both hemispheres 1.4
2392 Female, age 94, both hemispheres 1.3
2645 Female, age 72, unknown 1.3
1956 Male, age 74, unknown 1.2
2292 Female, age 85, both hemispheres 1.2
2196 Female, age 79, unknown 1.1
2284 Female, age 91, both hemispheres 1.1
2568 Male, age 61, both hemispheres 1.0
Globus pallidus, externus
nTPM: 1.7
2646 Male, age 61, right hemisphere 2.1
2772 Female, age 79, unknown 2.1
2567 Female, age 72, unknown 1.7
1996 Male, age 80, right hemisphere 1.6
2395 Male, age 75, both hemispheres 1.4
Globus pallidus, internus
nTPM: 1.5
1818 Male, age 74, unknown 2.1
2037 Male, age 80, right hemisphere 2.0
2111 Female, age 85, right hemisphere 1.6
2287 Male, age 75, right hemisphere 1.3
2483 Female, age 94, right hemisphere 1.2
2566 Female, age 72, unknown 1.1
2778 Female, age 91, both hemispheres 1.1
Nucleus accumbens
nTPM: 1.3
2286 Male, age 75, left hemisphere 1.5
1806 Female, age 85, left hemisphere 1.4
1856 Female, age 91, right hemisphere 1.3
2824 Male, age 61, right hemisphere 1.3
2391 Female, age 94, left hemisphere 1.2
1783 Male, age 74, unknown 1.1
2698 Female, age 72, unknown 1.1
2732 Male, age 80, right hemisphere 1.1
Nucleus basalis of Meynert
nTPM: 1.6
2821 Male, age 75, both hemispheres 2.6
2393 Male, age 80, right hemisphere 1.4
2484 Female, age 94, left hemisphere 1.2
2569 Male, age 61, both hemispheres 1.0
Nucleus of the diagonal band
nTPM: 1.4
1979 Male, age 74, unknown 1.7
2029 Male, age 61, right hemisphere 1.7
2195 Female, age 85, both hemispheres 1.4
2775 Male, age 80, right hemisphere 1.2
1812 Female, age 91, both hemispheres 1.1
Olfactory tubercle
nTPM: 1.5
1998 Female, age 91, both hemispheres 1.6
2856 Male, age 75, right hemisphere 1.6
1846 Male, age 80, right hemisphere 1.5
2487 Female, age 94, left hemisphere 1.2
Putamen
nTPM: 1.1
1937 Female, age 91, right hemisphere 1.3
1838 Male, age 80, right hemisphere 1.2
2482 Female, age 94, left hemisphere 1.2
1829 Male, age 74, unknown 1.1
2466 Female, age 79, unknown 1.1
2489 Female, age 72, unknown 1.0
2647 Male, age 75, left hemisphere 1.0
Septal nuclei
nTPM: 1.3
2394 Male, age 61, left hemisphere 2.2
2059 Female, age 85, both hemispheres 1.5
2629 Female, age 94, right hemisphere 1.2
2009 Female, age 91, both hemispheres 1.1
2031 Female, age 72, unknown 1.1
2199 Male, age 80, right hemisphere 1.1
1960 Male, age 74, unknown 1.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 0.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 0.7
Samples: 246

Max nTPM: 3.9
Min nTPM: 0.0
Std nTPM: 0.6
Median nTPM: 0.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 3.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 3.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 3.2
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 2.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 2.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 2.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 2.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 2.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 2.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 2.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 2.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 0.9
Samples: 246

Max nTPM: 9.2
Min nTPM: 0.0
Std nTPM: 1.1
Median nTPM: 0.5
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 9.2
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 8.3
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 5.7
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 5.7
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 5.6
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 5.2
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 5.0
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 3.9
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 3.6
GTEX-ZE7O-0011-R6a-SM-57WCI 50-59 years, female 3.4
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 2.9
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Brain - Putamen (basal ganglia)
Average nTPM: 0.9
Samples: 205

Max nTPM: 5.5
Min nTPM: 0.0
Std nTPM: 0.8
Median nTPM: 0.7
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 5.5
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 4.6
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 4.5
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 4.0
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 3.7
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 3.5
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 3.4
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 2.9
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 2.8
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 2.8
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 2.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 3.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 1.4
FF:10164-103B2 76 years, female 1.4
Globus pallidus
Scaled Tags Per Million: 3.0
FF:10161-103A8 76 years, female 3.7
FF:10175-103C4 60 years, female 2.3
Nucleus accumbens
Scaled Tags Per Million: 2.8
FF:10037-101F1 23-56 years, mixed 2.8
Putamen
Scaled Tags Per Million: 0.8
FF:10176-103C5 60 years, female 0.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 1.8
Pig sample Sample description nTPM
Caudate
nTPM: 0.5
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.1
Sample A Female 0.5
Sample B Female 0.8
Sample C Male 0.5
Sample D Male 0.1
Putamen
nTPM: 0.6
Samples: 4

Max nTPM: 0.9
Min nTPM: 0.3
Sample A Female 0.9
Sample B Female 0.3
Sample C Male 0.9
Sample D Male 0.4
Septum
nTPM: 1.8
Samples: 4

Max nTPM: 3.6
Min nTPM: 0.7
Sample A Female 1.1
Sample B Female 0.7
Sample C Male 3.6
Sample D Male 1.7
Ventral pallidum
nTPM: 1.1
Samples: 4

Max nTPM: 3.2
Min nTPM: 0.1
Sample A Female 0.1
Sample B Female 0.6
Sample C Male 3.2
Sample D Male 0.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 0.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0
Septum
nTPM: 0.2
Samples: 4

Max nTPM: 0.4
Min nTPM: 0.0
Sample A Male 0.4
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.2
Ventral forebrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.8
68446057 Antisense, RP_050113_01_D11, Mouse strain C57BL/6J (56 days, male) 0.8
Pallidum
Expression energy: 0.7
68446057 Antisense, RP_050113_01_D11, Mouse strain C57BL/6J (56 days, male) 0.7

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The Human Protein Atlas

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