BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:54.2 nTPM
HPA:54.2 nTPM
GTEx:51.3 nTPM
FANTOM5:32.2 Scaled Tags Per Million
Pig:2.8 nTPM
Mouse:17.2 nTPM
Allen mouse:6.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 54.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 54.2
2481 Female, age 94, left hemisphere 57.8
1781 Male, age 74, unknown 54.7
2290 Female, age 72, unknown 54.5
1854 Male, age 80, left hemisphere 54.0
2846 Female, age 79, unknown 54.0
2289 Male, age 61, right hemisphere 53.5
1857 Female, age 85, left hemisphere 52.8
2288 Male, age 75, left hemisphere 52.6
Claustrum
nTPM: 51.6
2196 Female, age 79, unknown 53.3
2198 Male, age 80, both hemispheres 53.1
2645 Female, age 72, unknown 52.4
2491 Male, age 75, both hemispheres 51.4
2284 Female, age 91, both hemispheres 51.2
2292 Female, age 85, both hemispheres 51.1
1956 Male, age 74, unknown 50.9
2392 Female, age 94, both hemispheres 50.4
2568 Male, age 61, both hemispheres 50.1
Globus pallidus, externus
nTPM: 52.3
1996 Male, age 80, right hemisphere 54.2
2772 Female, age 79, unknown 54.1
2395 Male, age 75, both hemispheres 52.0
2646 Male, age 61, right hemisphere 52.0
2567 Female, age 72, unknown 49.3
Globus pallidus, internus
nTPM: 52.6
2483 Female, age 94, right hemisphere 55.8
2287 Male, age 75, right hemisphere 55.2
2778 Female, age 91, both hemispheres 53.3
2111 Female, age 85, right hemisphere 51.2
1818 Male, age 74, unknown 51.1
2037 Male, age 80, right hemisphere 51.1
2566 Female, age 72, unknown 50.8
Nucleus accumbens
nTPM: 53.8
1856 Female, age 91, right hemisphere 55.2
2286 Male, age 75, left hemisphere 55.0
1783 Male, age 74, unknown 54.5
1806 Female, age 85, left hemisphere 54.4
2698 Female, age 72, unknown 53.5
2391 Female, age 94, left hemisphere 53.3
2824 Male, age 61, right hemisphere 53.0
2732 Male, age 80, right hemisphere 51.8
Nucleus basalis of Meynert
nTPM: 52.0
2484 Female, age 94, left hemisphere 53.2
2569 Male, age 61, both hemispheres 52.3
2821 Male, age 75, both hemispheres 51.7
2393 Male, age 80, right hemisphere 50.8
Nucleus of the diagonal band
nTPM: 52.5
2775 Male, age 80, right hemisphere 54.2
1812 Female, age 91, both hemispheres 53.4
1979 Male, age 74, unknown 53.1
2195 Female, age 85, both hemispheres 52.2
2029 Male, age 61, right hemisphere 49.7
Olfactory tubercle
nTPM: 52.4
1846 Male, age 80, right hemisphere 53.6
1998 Female, age 91, both hemispheres 53.1
2856 Male, age 75, right hemisphere 51.7
2487 Female, age 94, left hemisphere 51.3
Putamen
nTPM: 53.1
2482 Female, age 94, left hemisphere 56.2
2466 Female, age 79, unknown 53.6
1838 Male, age 80, right hemisphere 53.4
2489 Female, age 72, unknown 53.1
1937 Female, age 91, right hemisphere 52.8
2647 Male, age 75, left hemisphere 52.0
1829 Male, age 74, unknown 50.4
Septal nuclei
nTPM: 52.5
1960 Male, age 74, unknown 55.0
2031 Female, age 72, unknown 53.4
2629 Female, age 94, right hemisphere 52.7
2199 Male, age 80, right hemisphere 52.4
2009 Female, age 91, both hemispheres 51.7
2059 Female, age 85, both hemispheres 51.4
2394 Male, age 61, left hemisphere 50.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 51.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 47.3
Samples: 246

Max nTPM: 99.8
Min nTPM: 24.6
Std nTPM: 11.7
Median nTPM: 44.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 99.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 97.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 87.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 87.4
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 85.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 83.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 79.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 76.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 75.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 72.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 70.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 51.0
Samples: 246

Max nTPM: 127.1
Min nTPM: 21.4
Std nTPM: 12.7
Median nTPM: 48.9
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 127.1
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 99.3
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 95.8
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 93.5
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 87.0
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 83.5
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 78.5
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 77.2
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 74.6
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 72.2
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 71.9
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Brain - Putamen (basal ganglia)
Average nTPM: 51.3
Samples: 205

Max nTPM: 84.1
Min nTPM: 32.0
Std nTPM: 10.5
Median nTPM: 50.3
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 84.1
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 82.2
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 78.9
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 78.3
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 78.0
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 77.9
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 76.5
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 73.3
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 72.5
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 72.4
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 72.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 32.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 31.4
FF:10164-103B2 76 years, female 31.4
Globus pallidus
Scaled Tags Per Million: 28.0
FF:10175-103C4 60 years, female 28.4
FF:10161-103A8 76 years, female 27.6
Nucleus accumbens
Scaled Tags Per Million: 28.2
FF:10037-101F1 23-56 years, mixed 28.2
Putamen
Scaled Tags Per Million: 32.2
FF:10176-103C5 60 years, female 32.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 2.8
Pig sample Sample description nTPM
Caudate
nTPM: 2.4
Samples: 4

Max nTPM: 2.8
Min nTPM: 1.9
Sample A Female 2.5
Sample B Female 2.3
Sample C Male 2.8
Sample D Male 1.9
Putamen
nTPM: 2.9
Samples: 4

Max nTPM: 3.8
Min nTPM: 1.8
Sample A Female 3.0
Sample B Female 1.8
Sample C Male 3.8
Sample D Male 2.8
Septum
nTPM: 2.8
Samples: 4

Max nTPM: 3.7
Min nTPM: 2.2
Sample A Female 3.7
Sample B Female 2.7
Sample C Male 2.4
Sample D Male 2.2
Ventral pallidum
nTPM: 2.7
Samples: 4

Max nTPM: 3.3
Min nTPM: 2.0
Sample A Female 2.4
Sample B Female 3.3
Sample C Male 3.0
Sample D Male 2.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 17.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 17.2
Samples: 4

Max nTPM: 19.8
Min nTPM: 14.4
Sample A Male 17.1
Sample B Male 14.4
Sample C Female 17.4
Sample D Female 19.8
Septum
nTPM: 16.3
Samples: 4

Max nTPM: 18.5
Min nTPM: 14.2
Sample A Male 14.2
Sample B Male 18.5
Sample C Female 14.8
Sample D Female 17.6
Ventral forebrain
nTPM: 17.2
Samples: 4

Max nTPM: 22.3
Min nTPM: 13.8
Sample A Male 15.7
Sample B Male 17.1
Sample C Female 22.3
Sample D Female 13.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 6.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 5.8
71735827 Antisense, RP_051010_03_C01, Mouse strain C57BL/6J (56 days, male) 5.8
Pallidum
Expression energy: 6.0
71735827 Antisense, RP_051010_03_C01, Mouse strain C57BL/6J (56 days, male) 6.0

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