MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:55.2 nTPM
HPA:55.2 nTPM
GTEx:46.6 nTPM
FANTOM5:33.8 Scaled Tags Per Million
Pig:4.8 nTPM
Mouse:13.1 nTPM
Allen mouse:5.5 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 55.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 53.4
2586 Male, age 75, left hemisphere 55.8
2666 Male, age 74, left hemisphere 55.0
2019 Male, age 18, unknown 54.3
1870 Female, age 42, unknown 53.9
2411 Female, age 72, unknown 53.9
1827 Male, age 72, unknown 53.5
1833 Male, age 53, unknown 53.1
1830 Male, age 51, unknown 52.6
2828 Female, age 72, unknown 51.7
2219 Male, age 76, both hemispheres 50.5
Dorsal raphe nucleus
nTPM: 54.2
2047 Male, age 72, unknown 56.2
2298 Female, age 72, unknown 54.9
1828 Male, age 53, unknown 54.5
2750 Male, age 76, both hemispheres 52.9
2016 Female, age 72, unknown 52.5
Inferior colliculus
nTPM: 54.2
1848 Female, age 42, unknown 55.2
2849 Male, age 72, unknown 54.4
1890 Male, age 53, unknown 53.5
2097 Female, age 72, unknown 53.5
Median raphe nucleus
nTPM: 55.2
2220 Male, age 76, midline 55.2
Pedunculopontine tegmental nucleus
nTPM: 52.4
2334 Male, age 80, both hemispheres 53.9
1921 Female, age 85, both hemispheres 51.8
2338 Male, age 61, both hemispheres 51.6
Periaquaductal grey, anterior
nTPM: 54.7
1947 Male, age 18, unknown 55.9
2502 Female, age 75, unknown 54.1
1795 Male, age 51, unknown 54.0
Periaquaductal grey, dorsal
nTPM: 53.4
1840 Male, age 53, unknown 54.5
2850 Male, age 76, both hemispheres 54.3
2464 Female, age 72, unknown 52.7
1831 Male, age 72, unknown 52.1
Periaquaductal grey, lateral
nTPM: 51.8
2140 Male, age 76, both hemispheres 52.7
2272 Male, age 74, both hemispheres 51.7
2053 Male, age 18, unknown 51.0
Pretectal area
nTPM: 53.0
2007 Male, age 72, unknown 55.7
1817 Female, age 42, unknown 54.9
1944 Female, age 72, unknown 54.7
2316 Male, age 76, right hemisphere 53.4
1816 Male, age 51, unknown 53.0
2224 Female, age 72, unknown 52.8
1815 Male, age 53, unknown 52.5
2825 Male, age 18, unknown 52.5
2667 Female, age 75, unknown 52.1
2273 Male, age 74, both hemispheres 51.6
2407 Male, age 75, both hemispheres 50.1
Red nucleus
nTPM: 52.5
2785 Male, age 18, unknown 54.4
2588 Male, age 74, left hemisphere 54.1
1821 Female, age 72, unknown 53.2
2769 Male, age 72, unknown 52.9
2227 Male, age 72, unknown 52.8
1865 Male, age 51, unknown 52.3
2503 Female, age 72, unknown 52.1
1954 Female, age 42, unknown 52.0
2725 Female, age 75, unknown 52.0
1904 Male, age 53, unknown 51.8
2584 Male, age 75, left hemisphere 51.4
2823 Male, age 76, right hemisphere 51.0
Substantia nigra
nTPM: 54.7
1916 Female, age 42, unknown 57.2
2665 Male, age 74, both hemispheres 56.0
1851 Male, age 51, unknown 55.8
2409 Female, age 72, unknown 55.2
1941 Male, age 53, unknown 55.0
2583 Male, age 75, right hemisphere 54.8
2590 Female, age 75, unknown 54.1
1889 Female, age 72, unknown 53.9
2699 Male, age 18, unknown 52.6
2241 Male, age 72, unknown 51.9
Superior colliculus
nTPM: 53.1
2668 Female, age 75, unknown 55.6
1796 Male, age 53, unknown 54.7
1839 Male, age 51, unknown 54.1
2587 Male, age 74, left hemisphere 53.5
2664 Male, age 75, both hemispheres 53.1
2087 Female, age 72, unknown 53.0
2261 Male, age 18, unknown 52.3
1895 Male, age 76, right hemisphere 52.0
1995 Male, age 72, unknown 51.6
1913 Female, age 42, unknown 51.0
Ventral tegmental area
nTPM: 53.8
2410 Female, age 72, unknown 56.0
1915 Female, age 42, unknown 55.0
2218 Male, age 76, both hemispheres 53.4
1942 Male, age 51, unknown 53.1
2223 Female, age 72, unknown 52.8
2021 Male, age 53, unknown 52.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 46.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 46.6
Samples: 139

Max nTPM: 74.6
Min nTPM: 23.0
Std nTPM: 10.2
Median nTPM: 46.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 74.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 73.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 72.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 72.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 72.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 70.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 66.5
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 66.1
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 63.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 63.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 63.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 33.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 33.8
FF:10158-103A5 76 years, female 33.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 4.8
Pig sample Sample description nTPM
Midbrain
nTPM: 3.7
Samples: 4

Max nTPM: 5.7
Min nTPM: 2.6
Sample A Female 5.7
Sample B Female 3.0
Sample C Male 3.5
Sample D Male 2.6
Periaqueductal gray
nTPM: 3.1
Samples: 3

Max nTPM: 3.5
Min nTPM: 2.8
Sample B Female 2.8
Sample C Male 3.1
Sample D Male 3.5
Substantia nigra
nTPM: 4.1
Samples: 4

Max nTPM: 4.9
Min nTPM: 3.3
Sample A Female 4.9
Sample B Female 3.3
Sample C Male 3.7
Sample D Male 4.3
Superior colliculi
nTPM: 4.8
Samples: 4

Max nTPM: 6.0
Min nTPM: 4.1
Sample A Female 6.0
Sample B Female 4.1
Sample C Male 4.4
Sample D Male 4.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.1
Samples: 4

Max nTPM: 15.2
Min nTPM: 11.0
Sample A Male 13.4
Sample B Male 15.2
Sample C Female 11.0
Sample D Female 12.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.5
71735827 Antisense, RP_051010_03_C01, Mouse strain C57BL/6J (56 days, male) 5.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.