MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:47.6 nTPM
HPA:47.6 nTPM
GTEx:45.6 nTPM
FANTOM5:153.6 Scaled Tags Per Million
Pig:47.2 nTPM
Mouse:55.0 nTPM
Allen mouse:4.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 47.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 44.2
1830 Male, age 51, unknown 47.2
1870 Female, age 42, unknown 47.2
2411 Female, age 72, unknown 47.1
2019 Male, age 18, unknown 46.9
1833 Male, age 53, unknown 45.5
1827 Male, age 72, unknown 43.4
2586 Male, age 75, left hemisphere 42.5
2828 Female, age 72, unknown 42.4
2666 Male, age 74, left hemisphere 40.5
2219 Male, age 76, both hemispheres 39.7
Dorsal raphe nucleus
nTPM: 42.7
2750 Male, age 76, both hemispheres 45.0
1828 Male, age 53, unknown 43.7
2016 Female, age 72, unknown 43.0
2047 Male, age 72, unknown 42.4
2298 Female, age 72, unknown 39.6
Inferior colliculus
nTPM: 42.6
1848 Female, age 42, unknown 44.5
1890 Male, age 53, unknown 42.4
2097 Female, age 72, unknown 42.2
2849 Male, age 72, unknown 41.4
Median raphe nucleus
nTPM: 43.6
2220 Male, age 76, midline 43.6
Pedunculopontine tegmental nucleus
nTPM: 43.4
2338 Male, age 61, both hemispheres 44.0
2334 Male, age 80, both hemispheres 43.1
1921 Female, age 85, both hemispheres 43.0
Periaquaductal grey, anterior
nTPM: 41.2
1947 Male, age 18, unknown 43.4
2502 Female, age 75, unknown 41.5
1795 Male, age 51, unknown 38.8
Periaquaductal grey, dorsal
nTPM: 42.2
2850 Male, age 76, both hemispheres 43.3
2464 Female, age 72, unknown 42.4
1840 Male, age 53, unknown 41.9
1831 Male, age 72, unknown 41.3
Periaquaductal grey, lateral
nTPM: 42.2
2140 Male, age 76, both hemispheres 44.4
2053 Male, age 18, unknown 42.4
2272 Male, age 74, both hemispheres 39.9
Pretectal area
nTPM: 42.6
1815 Male, age 53, unknown 44.4
1817 Female, age 42, unknown 44.0
2316 Male, age 76, right hemisphere 43.7
2825 Male, age 18, unknown 43.4
2007 Male, age 72, unknown 43.3
2273 Male, age 74, both hemispheres 42.9
2667 Female, age 75, unknown 42.8
1944 Female, age 72, unknown 42.0
2407 Male, age 75, both hemispheres 41.1
1816 Male, age 51, unknown 41.0
2224 Female, age 72, unknown 40.3
Red nucleus
nTPM: 47.6
1865 Male, age 51, unknown 52.5
1954 Female, age 42, unknown 50.7
1904 Male, age 53, unknown 50.0
2588 Male, age 74, left hemisphere 49.3
2503 Female, age 72, unknown 48.6
2769 Male, age 72, unknown 48.2
1821 Female, age 72, unknown 47.9
2823 Male, age 76, right hemisphere 47.4
2725 Female, age 75, unknown 46.4
2227 Male, age 72, unknown 45.5
2785 Male, age 18, unknown 45.5
2584 Male, age 75, left hemisphere 38.9
Substantia nigra
nTPM: 47.2
2409 Female, age 72, unknown 78.0
2590 Female, age 75, unknown 48.8
2241 Male, age 72, unknown 45.9
1851 Male, age 51, unknown 45.1
1889 Female, age 72, unknown 43.3
2699 Male, age 18, unknown 43.2
1916 Female, age 42, unknown 42.8
2665 Male, age 74, both hemispheres 42.5
1941 Male, age 53, unknown 42.3
2583 Male, age 75, right hemisphere 40.2
Superior colliculus
nTPM: 42.0
1913 Female, age 42, unknown 45.7
1995 Male, age 72, unknown 45.6
1895 Male, age 76, right hemisphere 44.1
1839 Male, age 51, unknown 42.8
2587 Male, age 74, left hemisphere 41.8
1796 Male, age 53, unknown 41.1
2087 Female, age 72, unknown 40.7
2261 Male, age 18, unknown 40.4
2668 Female, age 75, unknown 39.9
2664 Male, age 75, both hemispheres 38.0
Ventral tegmental area
nTPM: 44.5
2410 Female, age 72, unknown 47.6
2223 Female, age 72, unknown 47.3
1915 Female, age 42, unknown 44.7
2021 Male, age 53, unknown 43.2
2218 Male, age 76, both hemispheres 42.2
1942 Male, age 51, unknown 41.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 45.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 45.6
Samples: 139

Max nTPM: 71.9
Min nTPM: 27.0
Std nTPM: 8.7
Median nTPM: 44.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 71.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 70.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 70.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 65.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 63.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 63.4
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 61.7
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 60.7
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 59.1
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 59.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 58.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 153.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 153.6
FF:10158-103A5 76 years, female 153.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 47.2
Pig sample Sample description nTPM
Midbrain
nTPM: 47.2
Samples: 4

Max nTPM: 73.7
Min nTPM: 33.8
Sample A Female 73.7
Sample B Female 45.5
Sample C Male 35.7
Sample D Male 33.8
Periaqueductal gray
nTPM: 40.0
Samples: 3

Max nTPM: 42.3
Min nTPM: 36.9
Sample B Female 42.3
Sample C Male 40.9
Sample D Male 36.9
Substantia nigra
nTPM: 45.7
Samples: 4

Max nTPM: 55.9
Min nTPM: 39.0
Sample A Female 47.5
Sample B Female 39.0
Sample C Male 40.4
Sample D Male 55.9
Superior colliculi
nTPM: 42.8
Samples: 4

Max nTPM: 46.5
Min nTPM: 39.4
Sample A Female 46.5
Sample B Female 39.4
Sample C Male 42.7
Sample D Male 42.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 55.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 55.1
Samples: 4

Max nTPM: 58.5
Min nTPM: 52.5
Sample A Male 52.5
Sample B Male 54.6
Sample C Female 58.5
Sample D Female 54.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.3
76098327 Antisense, RP_060626_01_E11, Mouse strain C57BL/6J (56 days, male) 4.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.