BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:37.0 nTPM
HPA:37.0 nTPM
GTEx:31.7 nTPM
FANTOM5:46.4 Scaled Tags Per Million
Pig:22.0 nTPM
Mouse:37.7 nTPM
Allen mouse:6.4 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA022840Antibody HPA022842
Glial cells LowNot detected
Neuronal cells HighLow



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 37.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 30.7
1854 Male, age 80, left hemisphere 32.2
2290 Female, age 72, unknown 31.7
1781 Male, age 74, unknown 31.5
2481 Female, age 94, left hemisphere 30.9
2289 Male, age 61, right hemisphere 30.4
2288 Male, age 75, left hemisphere 29.7
2846 Female, age 79, unknown 29.5
1857 Female, age 85, left hemisphere 29.3
Claustrum
nTPM: 33.5
2568 Male, age 61, both hemispheres 37.1
2198 Male, age 80, both hemispheres 35.3
2284 Female, age 91, both hemispheres 34.4
2491 Male, age 75, both hemispheres 33.9
1956 Male, age 74, unknown 33.8
2196 Female, age 79, unknown 32.0
2645 Female, age 72, unknown 32.0
2392 Female, age 94, both hemispheres 31.9
2292 Female, age 85, both hemispheres 31.3
Globus pallidus, externus
nTPM: 30.5
2646 Male, age 61, right hemisphere 33.1
2772 Female, age 79, unknown 31.8
2567 Female, age 72, unknown 31.4
1996 Male, age 80, right hemisphere 29.4
2395 Male, age 75, both hemispheres 26.5
Globus pallidus, internus
nTPM: 30.7
2483 Female, age 94, right hemisphere 33.4
1818 Male, age 74, unknown 32.1
2287 Male, age 75, right hemisphere 31.3
2566 Female, age 72, unknown 31.0
2111 Female, age 85, right hemisphere 30.1
2778 Female, age 91, both hemispheres 29.0
2037 Male, age 80, right hemisphere 28.0
Nucleus accumbens
nTPM: 31.3
1783 Male, age 74, unknown 34.7
1856 Female, age 91, right hemisphere 32.8
2286 Male, age 75, left hemisphere 32.5
2824 Male, age 61, right hemisphere 31.2
1806 Female, age 85, left hemisphere 31.0
2732 Male, age 80, right hemisphere 30.7
2698 Female, age 72, unknown 30.2
2391 Female, age 94, left hemisphere 27.7
Nucleus basalis of Meynert
nTPM: 30.0
2569 Male, age 61, both hemispheres 35.2
2484 Female, age 94, left hemisphere 29.5
2393 Male, age 80, right hemisphere 28.3
2821 Male, age 75, both hemispheres 27.1
Nucleus of the diagonal band
nTPM: 35.2
2775 Male, age 80, right hemisphere 40.0
2195 Female, age 85, both hemispheres 36.3
1812 Female, age 91, both hemispheres 34.1
2029 Male, age 61, right hemisphere 34.1
1979 Male, age 74, unknown 31.4
Olfactory tubercle
nTPM: 37.0
1998 Female, age 91, both hemispheres 39.1
2487 Female, age 94, left hemisphere 38.1
1846 Male, age 80, right hemisphere 37.1
2856 Male, age 75, right hemisphere 33.5
Putamen
nTPM: 30.9
2647 Male, age 75, left hemisphere 33.1
2482 Female, age 94, left hemisphere 31.8
1838 Male, age 80, right hemisphere 31.7
1937 Female, age 91, right hemisphere 31.2
2466 Female, age 79, unknown 30.4
2489 Female, age 72, unknown 29.8
1829 Male, age 74, unknown 28.0
Septal nuclei
nTPM: 34.2
1960 Male, age 74, unknown 37.8
2031 Female, age 72, unknown 36.6
2629 Female, age 94, right hemisphere 34.6
2059 Female, age 85, both hemispheres 34.0
2009 Female, age 91, both hemispheres 33.6
2394 Male, age 61, left hemisphere 31.9
2199 Male, age 80, right hemisphere 30.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 31.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 29.0
Samples: 246

Max nTPM: 47.3
Min nTPM: 15.3
Std nTPM: 4.7
Median nTPM: 29.3
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 47.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 42.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 42.4
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 41.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 38.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 37.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 37.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 37.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 37.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 37.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 37.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 31.7
Samples: 246

Max nTPM: 44.9
Min nTPM: 13.4
Std nTPM: 6.0
Median nTPM: 32.0
GTEX-1B933-0011-R6b-SM-79OOQ 50-59 years, female 44.9
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 44.6
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 43.9
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 42.8
GTEX-XLM4-0011-R6A-SM-4AT4B 60-69 years, male 42.8
GTEX-12ZZY-0011-R6b-SM-5EGLA 60-69 years, male 42.0
GTEX-13OW6-0011-R6b-SM-5L3GR 50-59 years, male 41.9
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 41.4
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 41.4
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 41.3
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 41.3
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Brain - Putamen (basal ganglia)
Average nTPM: 27.2
Samples: 205

Max nTPM: 39.4
Min nTPM: 14.7
Std nTPM: 4.5
Median nTPM: 27.3
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 39.4
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 38.6
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 36.7
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 36.3
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 35.5
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 35.3
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 35.3
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 35.2
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 35.1
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 35.1
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 35.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 46.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 39.2
FF:10164-103B2 76 years, female 39.2
Globus pallidus
Scaled Tags Per Million: 23.8
FF:10161-103A8 76 years, female 28.0
FF:10175-103C4 60 years, female 19.7
Nucleus accumbens
Scaled Tags Per Million: 46.4
FF:10037-101F1 23-56 years, mixed 46.4
Putamen
Scaled Tags Per Million: 44.0
FF:10176-103C5 60 years, female 44.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 22.0
Pig sample Sample description nTPM
Caudate
nTPM: 20.8
Samples: 4

Max nTPM: 23.7
Min nTPM: 17.5
Sample A Female 17.5
Sample B Female 21.8
Sample C Male 23.7
Sample D Male 20.1
Putamen
nTPM: 19.6
Samples: 4

Max nTPM: 22.0
Min nTPM: 16.5
Sample A Female 20.2
Sample B Female 16.5
Sample C Male 19.8
Sample D Male 22.0
Septum
nTPM: 20.1
Samples: 4

Max nTPM: 22.2
Min nTPM: 18.9
Sample A Female 19.5
Sample B Female 19.6
Sample C Male 22.2
Sample D Male 18.9
Ventral pallidum
nTPM: 22.0
Samples: 4

Max nTPM: 26.6
Min nTPM: 18.7
Sample A Female 18.7
Sample B Female 20.9
Sample C Male 26.6
Sample D Male 21.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 37.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 33.4
Samples: 4

Max nTPM: 35.1
Min nTPM: 31.7
Sample A Male 33.7
Sample B Male 35.1
Sample C Female 31.7
Sample D Female 33.1
Septum
nTPM: 37.7
Samples: 4

Max nTPM: 40.9
Min nTPM: 35.4
Sample A Male 40.9
Sample B Male 35.4
Sample C Female 35.4
Sample D Female 39.2
Ventral forebrain
nTPM: 35.3
Samples: 4

Max nTPM: 39.5
Min nTPM: 33.4
Sample A Male 34.6
Sample B Male 33.4
Sample C Female 33.5
Sample D Female 39.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 6.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 6.4
67815544 Antisense, RP_040920_01_H04, Mouse strain C57BL/6J (56 days, male) 6.4
Pallidum
Expression energy: 6.2
67815544 Antisense, RP_040920_01_H04, Mouse strain C57BL/6J (56 days, male) 6.2

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The Human Protein Atlas

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