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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
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Consensus:318.1 nTPM
HPA:318.1 nTPM
FANTOM5:294.5 Scaled Tags Per Million
Allen mouse:1.0 Expression energy

PONS - HPA Brain RNA-seq
Max nTPM 318.1
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 299.1
2090 Male, age 80, both hemispheres 301.3
2188 Female, age 91, both hemispheres 300.3
1984 Male, age 76, both hemispheres 300.1
2301 Female, age 85, both hemispheres 294.7
Dorsal cochlear nucleus
nTPM: 310.2
2802 Male, age 74, right hemisphere 327.6
2058 Male, age 76, both hemispheres 309.9
2187 Female, age 91, both hemispheres 308.7
2370 Male, age 61, both hemispheres 302.9
2378 Male, age 80, both hemispheres 302.1
Dorsal tegmental nucleus
nTPM: 310.4
2083 Male, age 80, both hemispheres 318.1
2326 Male, age 74, both hemispheres 313.8
1936 Male, age 76, left hemisphere 308.0
2358 Male, age 61, both hemispheres 301.9
Dorsolateral tegmental area
nTPM: 310.8
2654 Male, age 80, both hemispheres 318.6
2141 Male, age 76, both hemispheres 314.3
2751 Female, age 85, both hemispheres 314.1
2360 Male, age 74, both hemispheres 308.1
2337 Male, age 61, both hemispheres 298.8
Kolliker-Fuse nucleus
nTPM: 306.6
2315 Male, age 76, right hemisphere 314.2
2163 Male, age 80, both hemispheres 308.3
2793 Female, age 91, left hemisphere 297.4
Lateral lemniscal nuclei
nTPM: 305.9
2169 Male, age 76, both hemispheres 318.4
2746 Female, age 85, left hemisphere 312.7
2036 Male, age 80, both hemispheres 307.7
2453 Male, age 74, right hemisphere 302.7
2320 Female, age 91, left hemisphere 288.1
Lateral parabrachial nucleus
nTPM: 309.8
2139 Female, age 85, right hemisphere 320.8
2013 Male, age 80, both hemispheres 309.9
2792 Male, age 76, both hemispheres 306.8
2790 Male, age 61, both hemispheres 301.7
Lateral vestibular nucleus
nTPM: 304.9
2184 Male, age 76, both hemispheres 305.6
2311 Male, age 80, both hemispheres 304.2
Locus coeruleus
nTPM: 317.9
2788 Male, age 74, unknown 325.8
2123 Female, age 91, both hemispheres 325.7
2014 Male, age 55, unknown 323.3
2317 Female, age 72, unknown 316.2
2720 Male, age 74, both hemispheres 312.9
1980 Male, age 76, both hemispheres 312.3
2162 Male, age 80, both hemispheres 309.1
Medial olivary nucleus
nTPM: 306.7
2138 Female, age 91, both hemispheres 317.2
1962 Male, age 76, both hemispheres 307.1
1943 Male, age 61, both hemispheres 306.1
2851 Male, age 80, both hemispheres 296.6
Medial parabrachial nucleus
nTPM: 309.7
2170 Female, age 91, both hemispheres 317.8
2786 Male, age 76, both hemispheres 309.7
2854 Male, age 80, both hemispheres 308.7
2463 Female, age 85, right hemisphere 307.6
2156 Male, age 61, both hemispheres 304.6
Medial periolivary nuclei
nTPM: 307.5
2063 Male, age 76, both hemispheres 328.2
2171 Female, age 85, both hemispheres 310.6
2791 Male, age 74, right hemisphere 309.5
2081 Male, age 80, both hemispheres 296.9
2458 Female, age 91, both hemispheres 292.6
Motor facial nucleus
nTPM: 307.2
2062 Male, age 76, both hemispheres 327.6
2126 Male, age 61, both hemispheres 307.1
2365 Male, age 74, right hemisphere 304.6
2795 Female, age 91, both hemispheres 304.0
2697 Female, age 85, both hemispheres 302.3
2327 Male, age 80, both hemispheres 297.5
Motor trigeminal nucleus
nTPM: 303.8
2309 Male, age 76, both hemispheres 309.3
2560 Male, age 74, both hemispheres 306.8
2079 Male, age 80, both hemispheres 305.5
2335 Male, age 61, both hemispheres 302.4
2321 Female, age 91, both hemispheres 294.8
Nuclei of the trapezoid body
nTPM: 310.3
1983 Male, age 76, both hemispheres 325.6
2159 Male, age 61, both hemispheres 322.5
2735 Female, age 85, both hemispheres 311.9
2166 Male, age 80, both hemispheres 296.1
2368 Female, age 91, both hemispheres 295.4
Paramedian reticular nucleus
nTPM: 316.2
2050 Female, age 85, both hemispheres 330.7
2057 Male, age 80, both hemispheres 315.3
2052 Male, age 76, both hemispheres 312.3
2313 Male, age 61, both hemispheres 306.4
Pontine nuclei
nTPM: 315.1
1863 Male, age 55, unknown 336.2
2787 Female, age 85, both hemispheres 330.4
2727 Male, age 61, right hemisphere 325.8
2109 Female, age 72, unknown 319.0
1968 Male, age 76, left hemisphere 315.1
2115 Male, age 80, left hemisphere 299.0
2319 Female, age 91, both hemispheres 299.0
2454 Male, age 74, left hemisphere 296.0
Pontine raphe nucleus
nTPM: 318.1
2122 Female, age 85, midline 323.0
2853 Male, age 76, midline 313.2
Posteroventral cochlear nucleus
nTPM: 308.3
2752 Female, age 85, both hemispheres 319.5
2070 Male, age 76, both hemispheres 309.0
2341 Male, age 80, both hemispheres 306.8
2135 Female, age 91, both hemispheres 304.0
2371 Male, age 61, both hemispheres 302.0
Principal sensory trigeminal nucleus
nTPM: 307.2
2158 Male, age 61, both hemispheres 321.4
2008 Male, age 80, left hemisphere 311.2
2324 Male, age 76, both hemispheres 301.6
2367 Female, age 91, left hemisphere 294.4
Reticular pontine nucleus, caudal
nTPM: 305.5
2092 Male, age 76, both hemispheres 316.8
2559 Male, age 74, both hemispheres 307.0
2457 Female, age 91, both hemispheres 300.1
2332 Male, age 80, right hemisphere 298.1
Reticular pontine nucleus, oral
nTPM: 313.3
2012 Female, age 85, both hemispheres 326.2
2361 Male, age 74, both hemispheres 322.0
1939 Male, age 80, both hemispheres 319.3
2167 Male, age 76, both hemispheres 304.7
2366 Female, age 91, both hemispheres 294.2
Reticulotegmental nucleus
nTPM: 308.1
2325 Male, age 76, both hemispheres 313.6
2452 Male, age 74, both hemispheres 310.0
2333 Male, age 80, both hemispheres 305.2
2322 Female, age 91, both hemispheres 303.7
Spinal trigeminal nucleus, oral
nTPM: 307.0
2737 Female, age 85, both hemispheres 309.1
1978 Male, age 76, both hemispheres 308.4
2164 Male, age 80, both hemispheres 303.4
Subcoeruleus area
nTPM: 313.2
1958 Male, age 80, both hemispheres 320.1
2323 Female, age 91, left hemisphere 316.6
2451 Male, age 74, both hemispheres 312.0
2369 Female, age 85, left hemisphere 310.2
2089 Male, age 76, left hemisphere 307.3
Superior olive
nTPM: 310.8
1875 Female, age 85, both hemispheres 328.8
2020 Male, age 76, both hemispheres 317.5
2364 Male, age 74, right hemisphere 315.6
2561 Female, age 91, both hemispheres 296.4
2329 Male, age 80, right hemisphere 295.7
Superior vestibular nucleus
nTPM: 316.1
2383 Male, age 74, both hemispheres 325.1
2015 Male, age 80, both hemispheres 313.5
2061 Male, age 76, both hemispheres 309.7
Ventral periolivary nuclei
nTPM: 305.3
2023 Male, age 76, both hemispheres 314.6
2165 Male, age 80, both hemispheres 312.0
2130 Female, age 85, both hemispheres 302.8
2794 Female, age 91, left hemisphere 291.7
Ventrolateral tegmental area, A5 NE cell group
nTPM: 304.6
1959 Male, age 76, both hemispheres 313.8
2449 Male, age 74, both hemispheres 309.6
2840 Female, age 85, both hemispheres 307.6
2359 Male, age 61, both hemispheres 304.3
2161 Male, age 80, both hemispheres 298.4
2456 Female, age 91, both hemispheres 293.7

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 294.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 207.3
FF:10182-103D2 60 years, female 220.2
FF:10165-103B3 76 years, female 194.3
Pons
Scaled Tags Per Million: 294.5
FF:10033-101E6 18-54 years, mixed 294.5

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

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Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 1.0
513242 Antisense, RP_040810_01_D10, Mouse strain C57BL/6J (56 days, male) 1.0

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