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RPS17
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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:1226.9 nTPM
HPA:1226.9 nTPM
GTEx:1055.8 nTPM
FANTOM5:36.2 Scaled Tags Per Million
Pig:68.5 nTPM
Mouse:911.1 nTPM
Allen mouse:0.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 1226.9
Sample id Sample description nTPM
Amygdala
nTPM: 1226.9
2695 Female, age 67, right hemisphere 1273.1
2514 Male, age 75, right hemisphere 1233.8
2814 Male, age 76, right hemisphere 1213.0
1987 Female, age 91, left hemisphere 1208.2
2517 Female, age 94, left hemisphere 1206.3
Basal amygdala
nTPM: 1199.4
2827 Female, age 67, right hemisphere 1249.8
2609 Male, age 75, right hemisphere 1210.8
2685 Female, age 94, left hemisphere 1195.8
2110 Male, age 80, left hemisphere 1191.2
1955 Male, age 76, both hemispheres 1177.0
2243 Female, age 91, right hemisphere 1171.6
Central amygdala
nTPM: 1210.0
2826 Female, age 94, left hemisphere 1281.3
2515 Male, age 75, right hemisphere 1207.1
1905 Male, age 76, both hemispheres 1200.3
2239 Male, age 80, left hemisphere 1180.9
2701 Female, age 91, right hemisphere 1180.2
Corticomedial amygdala
nTPM: 1198.0
2240 Male, age 76, both hemispheres 1211.3
2535 Female, age 67, right hemisphere 1208.8
2428 Male, age 75, right hemisphere 1203.0
2829 Male, age 80, left hemisphere 1195.4
2429 Female, age 94, left hemisphere 1187.3
2242 Female, age 91, right hemisphere 1181.9
Lateral amygdala
nTPM: 1214.2
2830 Female, age 67, right hemisphere 1283.4
2516 Male, age 75, right hemisphere 1236.3
2534 Female, age 94, left hemisphere 1227.0
2256 Male, age 80, left hemisphere 1191.6
1883 Male, age 76, both hemispheres 1180.2
2255 Female, age 91, right hemisphere 1166.6
Stria terminalis, bed nucleus
nTPM: 1166.1
1974 Female, age 91, both hemispheres 1180.4
2201 Male, age 74, unknown 1168.4
2486 Female, age 94, both hemispheres 1149.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1055.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1055.8
Samples: 152

Max nTPM: 2813.7
Min nTPM: 495.7
Std nTPM: 437.4
Median nTPM: 940.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 2813.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 2813.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 2744.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2290.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 2181.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 2140.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 2007.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1928.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1903.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1871.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 1849.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1781.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 1780.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1773.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1649.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1603.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1591.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 1526.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1516.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 1495.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1492.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1483.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1413.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1410.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1393.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1377.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1359.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1310.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1278.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1277.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1274.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 1270.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 1255.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1255.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1236.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1206.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1205.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1180.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1175.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1152.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1142.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1141.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1133.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1131.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1120.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1109.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1101.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1098.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1093.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1085.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1079.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1074.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1063.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1060.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1058.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1058.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1033.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1032.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1030.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1026.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1025.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1021.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1020.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1014.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 1014.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1013.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1008.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 996.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 993.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 992.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 990.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 968.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 955.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 953.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 946.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 944.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 936.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 935.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 933.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 923.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 922.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 915.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 909.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 909.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 904.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 903.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 894.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 892.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 873.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 872.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 871.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 866.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 866.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 866.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 866.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 861.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 858.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 857.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 852.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 843.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 840.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 837.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 825.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 819.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 819.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 810.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 810.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 792.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 782.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 782.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 777.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 775.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 769.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 766.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 764.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 761.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 758.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 757.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 756.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 752.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 751.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 750.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 747.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 737.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 736.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 735.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 730.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 722.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 697.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 684.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 667.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 664.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 660.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 658.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 656.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 653.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 653.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 646.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 631.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 627.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 609.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 595.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 594.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 594.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 585.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 579.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 573.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 541.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 538.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 534.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 520.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 495.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 36.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 36.2
FF:10151-102I7 76 years, female 36.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 68.5
Pig sample Sample description nTPM
Amygdala
nTPM: 68.5
Samples: 4

Max nTPM: 89.0
Min nTPM: 40.0
Sample A Female 80.2
Sample B Female 89.0
Sample C Male 64.6
Sample D Male 40.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 911.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 911.1
Samples: 4

Max nTPM: 965.0
Min nTPM: 831.8
Sample A Male 831.8
Sample B Male 965.0
Sample C Female 926.5
Sample D Female 921.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.1
71763583 Antisense, RP_050921_02_C07, Mouse strain C57BL/6J (56 days, male) 0.1

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