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RPS17
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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

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No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
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Consensus:1264.1 nTPM
HPA:1264.1 nTPM
FANTOM5:31.8 Scaled Tags Per Million
Pig:111.4 nTPM
Allen mouse:0.3 Expression energy

PONS - HPA Brain RNA-seq
Max nTPM 1264.1
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 1225.6
2188 Female, age 91, both hemispheres 1256.7
2301 Female, age 85, both hemispheres 1236.7
2090 Male, age 80, both hemispheres 1229.2
1984 Male, age 76, both hemispheres 1179.7
Dorsal cochlear nucleus
nTPM: 1224.7
2802 Male, age 74, right hemisphere 1251.7
2187 Female, age 91, both hemispheres 1238.5
2378 Male, age 80, both hemispheres 1237.3
2370 Male, age 61, both hemispheres 1215.3
2058 Male, age 76, both hemispheres 1180.6
Dorsal tegmental nucleus
nTPM: 1230.5
2358 Male, age 61, both hemispheres 1283.7
2326 Male, age 74, both hemispheres 1229.7
2083 Male, age 80, both hemispheres 1225.6
1936 Male, age 76, left hemisphere 1182.9
Dorsolateral tegmental area
nTPM: 1213.0
2337 Male, age 61, both hemispheres 1243.1
2654 Male, age 80, both hemispheres 1237.9
2751 Female, age 85, both hemispheres 1211.9
2360 Male, age 74, both hemispheres 1187.2
2141 Male, age 76, both hemispheres 1185.1
Kolliker-Fuse nucleus
nTPM: 1222.2
2793 Female, age 91, left hemisphere 1240.8
2315 Male, age 76, right hemisphere 1228.5
2163 Male, age 80, both hemispheres 1197.3
Lateral lemniscal nuclei
nTPM: 1178.6
2169 Male, age 76, both hemispheres 1195.8
2320 Female, age 91, left hemisphere 1179.0
2746 Female, age 85, left hemisphere 1175.8
2453 Male, age 74, right hemisphere 1174.6
2036 Male, age 80, both hemispheres 1168.0
Lateral parabrachial nucleus
nTPM: 1225.1
2792 Male, age 76, both hemispheres 1270.6
2013 Male, age 80, both hemispheres 1224.7
2790 Male, age 61, both hemispheres 1210.6
2139 Female, age 85, right hemisphere 1194.6
Lateral vestibular nucleus
nTPM: 1207.6
2311 Male, age 80, both hemispheres 1237.4
2184 Male, age 76, both hemispheres 1177.8
Locus coeruleus
nTPM: 1188.4
2720 Male, age 74, both hemispheres 1223.7
2788 Male, age 74, unknown 1207.3
2162 Male, age 80, both hemispheres 1205.5
2123 Female, age 91, both hemispheres 1183.9
2317 Female, age 72, unknown 1174.2
2014 Male, age 55, unknown 1162.8
1980 Male, age 76, both hemispheres 1161.5
Medial olivary nucleus
nTPM: 1264.1
2851 Male, age 80, both hemispheres 1281.3
1962 Male, age 76, both hemispheres 1270.3
1943 Male, age 61, both hemispheres 1270.1
2138 Female, age 91, both hemispheres 1234.8
Medial parabrachial nucleus
nTPM: 1215.3
2170 Female, age 91, both hemispheres 1249.5
2854 Male, age 80, both hemispheres 1234.5
2786 Male, age 76, both hemispheres 1204.1
2156 Male, age 61, both hemispheres 1197.0
2463 Female, age 85, right hemisphere 1191.3
Medial periolivary nuclei
nTPM: 1188.3
2458 Female, age 91, both hemispheres 1213.2
2081 Male, age 80, both hemispheres 1197.6
2063 Male, age 76, both hemispheres 1188.9
2791 Male, age 74, right hemisphere 1180.3
2171 Female, age 85, both hemispheres 1161.3
Motor facial nucleus
nTPM: 1192.4
2697 Female, age 85, both hemispheres 1220.8
2795 Female, age 91, both hemispheres 1219.3
2365 Male, age 74, right hemisphere 1198.5
2126 Male, age 61, both hemispheres 1189.3
2062 Male, age 76, both hemispheres 1167.6
2327 Male, age 80, both hemispheres 1159.0
Motor trigeminal nucleus
nTPM: 1196.8
2335 Male, age 61, both hemispheres 1204.2
2560 Male, age 74, both hemispheres 1203.4
2321 Female, age 91, both hemispheres 1203.1
2309 Male, age 76, both hemispheres 1198.7
2079 Male, age 80, both hemispheres 1174.5
Nuclei of the trapezoid body
nTPM: 1180.1
1983 Male, age 76, both hemispheres 1206.8
2166 Male, age 80, both hemispheres 1192.5
2368 Female, age 91, both hemispheres 1182.6
2159 Male, age 61, both hemispheres 1169.8
2735 Female, age 85, both hemispheres 1148.7
Paramedian reticular nucleus
nTPM: 1209.5
2052 Male, age 76, both hemispheres 1270.6
2313 Male, age 61, both hemispheres 1197.0
2057 Male, age 80, both hemispheres 1185.8
2050 Female, age 85, both hemispheres 1184.4
Pontine nuclei
nTPM: 1184.8
2319 Female, age 91, both hemispheres 1208.8
2454 Male, age 74, left hemisphere 1198.8
1863 Male, age 55, unknown 1190.9
2109 Female, age 72, unknown 1187.6
1968 Male, age 76, left hemisphere 1184.5
2115 Male, age 80, left hemisphere 1184.1
2787 Female, age 85, both hemispheres 1176.8
2727 Male, age 61, right hemisphere 1147.0
Pontine raphe nucleus
nTPM: 1179.7
2853 Male, age 76, midline 1191.1
2122 Female, age 85, midline 1168.4
Posteroventral cochlear nucleus
nTPM: 1230.3
2341 Male, age 80, both hemispheres 1286.2
2135 Female, age 91, both hemispheres 1251.6
2371 Male, age 61, both hemispheres 1233.7
2070 Male, age 76, both hemispheres 1200.5
2752 Female, age 85, both hemispheres 1179.7
Principal sensory trigeminal nucleus
nTPM: 1175.7
2367 Female, age 91, left hemisphere 1209.9
2324 Male, age 76, both hemispheres 1175.4
2158 Male, age 61, both hemispheres 1163.5
2008 Male, age 80, left hemisphere 1154.1
Reticular pontine nucleus, caudal
nTPM: 1215.7
2457 Female, age 91, both hemispheres 1272.4
2559 Male, age 74, both hemispheres 1224.5
2092 Male, age 76, both hemispheres 1212.3
2332 Male, age 80, right hemisphere 1153.4
Reticular pontine nucleus, oral
nTPM: 1209.4
2366 Female, age 91, both hemispheres 1239.2
2361 Male, age 74, both hemispheres 1212.3
2167 Male, age 76, both hemispheres 1211.5
1939 Male, age 80, both hemispheres 1211.0
2012 Female, age 85, both hemispheres 1173.2
Reticulotegmental nucleus
nTPM: 1194.3
2452 Male, age 74, both hemispheres 1216.6
2322 Female, age 91, both hemispheres 1200.9
2333 Male, age 80, both hemispheres 1186.5
2325 Male, age 76, both hemispheres 1173.0
Spinal trigeminal nucleus, oral
nTPM: 1186.6
2164 Male, age 80, both hemispheres 1200.9
1978 Male, age 76, both hemispheres 1192.0
2737 Female, age 85, both hemispheres 1166.8
Subcoeruleus area
nTPM: 1200.4
2451 Male, age 74, both hemispheres 1226.5
2369 Female, age 85, left hemisphere 1218.6
1958 Male, age 80, both hemispheres 1194.7
2323 Female, age 91, left hemisphere 1188.0
2089 Male, age 76, left hemisphere 1174.0
Superior olive
nTPM: 1193.7
2020 Male, age 76, both hemispheres 1227.4
2561 Female, age 91, both hemispheres 1210.4
2364 Male, age 74, right hemisphere 1184.8
1875 Female, age 85, both hemispheres 1174.5
2329 Male, age 80, right hemisphere 1171.5
Superior vestibular nucleus
nTPM: 1218.8
2383 Male, age 74, both hemispheres 1248.8
2015 Male, age 80, both hemispheres 1220.9
2061 Male, age 76, both hemispheres 1186.7
Ventral periolivary nuclei
nTPM: 1190.5
2023 Male, age 76, both hemispheres 1213.4
2794 Female, age 91, left hemisphere 1197.5
2165 Male, age 80, both hemispheres 1189.3
2130 Female, age 85, both hemispheres 1161.6
Ventrolateral tegmental area, A5 NE cell group
nTPM: 1202.9
2840 Female, age 85, both hemispheres 1226.4
2359 Male, age 61, both hemispheres 1209.8
2161 Male, age 80, both hemispheres 1208.9
1959 Male, age 76, both hemispheres 1199.7
2456 Female, age 91, both hemispheres 1194.9
2449 Male, age 74, both hemispheres 1177.9

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 31.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 31.8
FF:10165-103B3 76 years, female 37.0
FF:10182-103D2 60 years, female 26.7
Pons
Scaled Tags Per Million: 22.6
FF:10033-101E6 18-54 years, mixed 22.6

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 111.4
Pig sample Sample description nTPM
Pons
nTPM: 111.4
Samples: 4

Max nTPM: 135.7
Min nTPM: 84.3
Sample A Female 102.7
Sample B Female 84.3
Sample C Male 135.7
Sample D Male 122.7

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

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Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 0.3
71763583 Antisense, RP_050921_02_C07, Mouse strain C57BL/6J (56 days, male) 0.3

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