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COL18A1
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  • COL18A1
TISSUE PRIMARY DATA OVARY Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Ovary
Tissue proteome
Ovary
OVARY - Expression summary
Protein expression
Ovaryi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Follicle cells: Low
Ovarian stroma cells: High
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:257.3 nTPM
HPA:65.5 nTPM
GTEx:257.3 nTPM
FANTOM5:200.4 Scaled Tags Per Million

OVARY - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA030933
Follicle cells Low
Ovarian stroma cells High



OVARY - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 65.5
overview
Female, age 64
Ovary sample 192
nTPM: 100.1
Cell types%
Stromal cells:
70

Smooth muscle cells:
15

Other cell types:
15

overview
Female, age 52
Ovary sample 193
nTPM: 65.3
Cell types%
Stromal cells:
95

Other cell types:
5

overview
Female, age 80
Ovary sample 308
nTPM: 31.3
Cell types%
Stromal cells:
70

Smooth muscle cells:
25

Other cell types:
5


OVARY - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 257.3
GTEx sample id Sample description nTPM
Ovary
Average nTPM: 257.3
Samples: 180

Max nTPM: 657.8
Min nTPM: 90.2
Std nTPM: 93.3
Median nTPM: 247.0
GTEX-15EOM-1526-SM-68723 20-29 years, female 657.8
GTEX-1RDX4-0826-SM-E9TK7 50-59 years, female 543.1
GTEX-13O3O-2726-SM-5KM35 60-69 years, female 541.5
GTEX-RWS6-1026-SM-47JXD 60-69 years, female 539.2
GTEX-RTLS-2326-SM-46MUH 60-69 years, female 532.3
GTEX-145MI-2626-SM-5QGQ8 60-69 years, female 496.9
GTEX-ZLWG-0926-SM-4WWC3 50-59 years, female 491.9
GTEX-1F5PL-1626-SM-7MXTY 40-49 years, female 451.1
GTEX-Y114-1726-SM-4TT7U 50-59 years, female 434.9
GTEX-11EMC-1726-SM-5H11P 60-69 years, female 430.5
GTEX-11XUK-1626-SM-5GU5O 40-49 years, female 430.4
GTEX-18A7A-2626-SM-7LG6L 50-59 years, female 414.5
GTEX-T5JW-0426-SM-4DM7M 20-29 years, female 412.5
GTEX-WWYW-2726-SM-4MVOP 50-59 years, female 401.0
GTEX-QVJO-3126-SM-COH22 60-69 years, female 383.1
GTEX-1C475-0426-SM-7P8OU 40-49 years, female 382.7
GTEX-1LNCM-0926-SM-DHXK5 50-59 years, female 377.2
GTEX-1K9T9-2426-SM-DHXKT 50-59 years, female 372.3
GTEX-1JN1M-2126-SM-D4P2X 60-69 years, female 367.2
GTEX-S4P3-0926-SM-4AD54 50-59 years, female 367.0
GTEX-145LS-2326-SM-5TDCY 60-69 years, female 365.2
GTEX-16MT8-2226-SM-6LPK2 60-69 years, female 361.7
GTEX-PLZ4-2826-SM-3P617 50-59 years, female 357.5
GTEX-13OVJ-2426-SM-5KM3I 50-59 years, female 354.3
GTEX-13VXT-1526-SM-5LU3J 20-29 years, female 352.3
GTEX-11I78-1926-SM-59878 50-59 years, female 338.9
GTEX-P4PP-2426-SM-3P61L 30-39 years, female 334.2
GTEX-11EM3-1726-SM-5N9D1 20-29 years, female 330.9
GTEX-13PL7-2326-SM-5L3FY 60-69 years, female 330.9
GTEX-1F88E-2026-SM-7MXVP 60-69 years, female 327.8
GTEX-1PBJI-2026-SM-DPRYF 20-29 years, female 325.5
GTEX-14PKU-1226-SM-686ZM 40-49 years, female 324.9
GTEX-WYBS-2426-SM-4ONDI 60-69 years, female 324.8
GTEX-1MA7W-1426-SM-EV7A1 20-29 years, female 320.7
GTEX-1B933-2126-SM-7MGXR 50-59 years, female 318.6
GTEX-TSE9-2226-SM-4DXUR 60-69 years, female 316.8
GTEX-X4EO-2426-SM-4QASD 60-69 years, female 314.7
GTEX-OHPK-2426-SM-3MJGH 50-59 years, female 310.2
GTEX-15FZZ-0826-SM-6LLJO 30-39 years, female 308.8
GTEX-WI4N-2526-SM-4OOSE 40-49 years, female 308.4
GTEX-S341-0726-SM-4AD5R 40-49 years, female 308.3
GTEX-ZPIC-1426-SM-4WWCP 40-49 years, female 307.1
GTEX-1I4MK-1526-SM-CE6T1 50-59 years, female 305.3
GTEX-XYKS-1726-SM-4E3IO 60-69 years, female 299.1
GTEX-13QBU-1526-SM-5LU3W 40-49 years, female 295.2
GTEX-1EWIQ-2226-SM-7MGXJ 70-79 years, female 294.7
GTEX-1QPFJ-1726-SM-EXOJU 30-39 years, female 293.4
GTEX-TMMY-1726-SM-4DXTD 40-49 years, female 292.0
GTEX-13W3W-1526-SM-5LU5I 60-69 years, female 289.1
GTEX-1ICG6-1526-SM-C1YQT 70-79 years, female 288.1
GTEX-S32W-1226-SM-4AD67 50-59 years, female 287.9
GTEX-ZP4G-0626-SM-4WWF1 20-29 years, female 287.3
GTEX-1LGOU-1026-SM-DHXL4 20-29 years, female 286.9
GTEX-16NGA-0426-SM-7LG6K 40-49 years, female 285.7
GTEX-15DDE-2326-SM-6AJA8 50-59 years, female 282.9
GTEX-XUW1-0126-SM-4BOOQ 50-59 years, female 282.3
GTEX-11GSP-0226-SM-5A5KV 60-69 years, female 280.6
GTEX-13PVR-1226-SM-5RQJ2 60-69 years, female 279.2
GTEX-U3ZN-1026-SM-4DXTC 30-39 years, female 275.5
GTEX-12WSJ-1226-SM-5LU91 40-49 years, female 275.2
GTEX-1QEPI-2726-SM-DPRZ6 60-69 years, female 275.1
GTEX-12WSK-1926-SM-5LZVK 40-49 years, female 274.5
GTEX-PWCY-1326-SM-48TCU 20-29 years, female 273.1
GTEX-ZZPU-2126-SM-5EGIU 50-59 years, female 270.7
GTEX-1IDJE-1126-SM-A96SO 50-59 years, female 270.7
GTEX-QCQG-1426-SM-48U22 50-59 years, female 268.8
GTEX-12WSG-1426-SM-5FQUK 50-59 years, female 266.3
GTEX-1313W-2726-SM-5P9IX 50-59 years, female 265.9
GTEX-1GN1W-1426-SM-9JGHP 50-59 years, female 265.4
GTEX-1J8JJ-0826-SM-AHZ3F 60-69 years, female 264.7
GTEX-PWN1-2426-SM-48TDD 40-49 years, female 264.3
GTEX-P4QT-2426-SM-3NMCL 50-59 years, female 263.7
GTEX-W5WG-0926-SM-4RTX9 50-59 years, female 261.9
GTEX-1R9PN-0626-SM-E6CR9 40-49 years, female 261.1
GTEX-13QIC-1526-SM-5IJFL 60-69 years, female 260.6
GTEX-13D11-1126-SM-5KLYS 50-59 years, female 259.7
GTEX-11ZTT-1826-SM-5CVLN 60-69 years, female 257.4
GTEX-14DAQ-2226-SM-5YYAD 60-69 years, female 256.2
GTEX-PX3G-2426-SM-48TZZ 20-29 years, female 254.8
GTEX-13OVI-0726-SM-5L3DD 60-69 years, female 254.1
GTEX-1A32A-2726-SM-73KVU 50-59 years, female 253.7
GTEX-ZVT3-2626-SM-5GU5L 60-69 years, female 253.1
GTEX-X8HC-2726-SM-46MUA 50-59 years, female 252.7
GTEX-14BIN-1426-SM-664NI 50-59 years, female 252.2
GTEX-145ME-1226-SM-5SIB6 40-49 years, female 251.3
GTEX-OHPL-2426-SM-48TDN 60-69 years, female 250.9
GTEX-WXYG-1426-SM-4ONCK 50-59 years, female 250.6
GTEX-11ZVC-1426-SM-5EGGA 50-59 years, female 250.1
GTEX-1HSGN-2426-SM-C1YRI 40-49 years, female 247.8
GTEX-1QP28-1326-SM-DPRXZ 50-59 years, female 247.7
GTEX-131YS-2226-SM-5P9G8 60-69 years, female 246.4
GTEX-UJHI-1226-SM-4IHLR 50-59 years, female 245.9
GTEX-ZVT2-0326-SM-5E44G 50-59 years, female 245.2
GTEX-1F6RS-2726-SM-7MKHA 60-69 years, female 244.8
GTEX-ZYFG-1726-SM-5GZZB 60-69 years, female 244.1
GTEX-12ZZX-2026-SM-5LZV9 40-49 years, female 243.0
GTEX-14PN3-1526-SM-6ETZM 60-69 years, female 243.0
GTEX-14PKV-1226-SM-6871T 20-29 years, female 241.8
GTEX-11P81-1526-SM-5P9GS 30-39 years, female 241.0
GTEX-1LVAM-1826-SM-DHXKR 50-59 years, female 237.7
GTEX-11DXX-1426-SM-5GIDU 60-69 years, female 236.0
GTEX-XMD3-2326-SM-4AT5H 50-59 years, female 235.7
GTEX-14PJM-2426-SM-686ZC 50-59 years, female 235.5
GTEX-T6MO-1126-SM-4DM5D 40-49 years, female 234.5
GTEX-13U4I-2126-SM-5LU55 40-49 years, female 230.7
GTEX-XUZC-1026-SM-4BOPY 30-39 years, female 230.0
GTEX-R55G-1526-SM-48FER 40-49 years, female 229.9
GTEX-11ZTS-1926-SM-5CVLA 60-69 years, female 227.5
GTEX-13SLX-2426-SM-664OM 50-59 years, female 226.0
GTEX-1OJC4-2026-SM-E6CQW 50-59 years, female 225.2
GTEX-146FH-2526-SM-5Q5BP 50-59 years, female 224.7
GTEX-1J1OQ-1626-SM-CE6TB 40-49 years, female 224.4
GTEX-T2IS-2026-SM-4DM6W 20-29 years, female 223.4
GTEX-1F52S-2226-SM-7MXVE 60-69 years, female 223.0
GTEX-14AS3-1326-SM-5RQJE 40-49 years, female 222.9
GTEX-1HBPH-2726-SM-A96TW 40-49 years, female 222.8
GTEX-17JCI-2326-SM-7IGPC 60-69 years, female 222.1
GTEX-1F48J-2326-SM-7MKG3 50-59 years, female 221.7
GTEX-139D8-2426-SM-5KM3A 30-39 years, female 221.0
GTEX-15ER7-2326-SM-7KUN3 20-29 years, female 219.9
GTEX-TML8-0926-SM-4DXSJ 40-49 years, female 217.9
GTEX-SN8G-2426-SM-EVR31 50-59 years, female 213.6
GTEX-1399U-1726-SM-5P9J4 50-59 years, female 210.8
GTEX-1MCC2-1026-SM-EVR5I 30-39 years, female 210.8
GTEX-1AMFI-1426-SM-731EL 50-59 years, female 206.8
GTEX-11VI4-1026-SM-5EQM1 40-49 years, female 206.7
GTEX-1IKOE-2326-SM-A8N99 30-39 years, female 206.1
GTEX-YFC4-2726-SM-5IFJW 40-49 years, female 205.2
GTEX-1KANC-1026-SM-D3LAA 50-59 years, female 202.3
GTEX-1H1CY-1926-SM-9WG7X 60-69 years, female 201.5
GTEX-POMQ-1426-SM-3P61D 20-29 years, female 200.8
GTEX-1CAMS-2126-SM-7MXTF 40-49 years, female 200.4
GTEX-RU72-2226-SM-46MUE 50-59 years, female 198.8
GTEX-1S5ZU-2326-SM-EAZ5B 20-29 years, female 198.8
GTEX-14JG6-0626-SM-68716 30-39 years, female 198.2
GTEX-13FTX-0926-SM-5IFF7 20-29 years, female 195.6
GTEX-15SDE-0926-SM-6LPIA 50-59 years, female 193.2
GTEX-183WM-1926-SM-72D5F 70-79 years, female 192.7
GTEX-133LE-1226-SM-5IFGC 20-29 years, female 190.0
GTEX-1PIEJ-1626-SM-E6CP9 20-29 years, female 188.5
GTEX-1AMEY-0926-SM-72D6G 30-39 years, female 188.0
GTEX-QDT8-2226-SM-EZ6LT 30-39 years, female 186.3
GTEX-1269C-1826-SM-5N9E1 60-69 years, female 185.7
GTEX-15DYW-2626-SM-6LPK7 60-69 years, female 180.6
GTEX-1IDJU-1126-SM-A9G2S 60-69 years, female 178.6
GTEX-1GN1U-2326-SM-9MQK4 50-59 years, female 177.9
GTEX-WYVS-1526-SM-4OND4 40-49 years, female 177.8
GTEX-13X6H-1026-SM-5SIBE 50-59 years, female 174.0
GTEX-ZV6S-1426-SM-59HKX 40-49 years, female 171.9
GTEX-1LKK1-1626-SM-EVR4Y 50-59 years, female 169.8
GTEX-P78B-1926-SM-3P616 40-49 years, female 168.4
GTEX-RU1J-0826-SM-46MUU 20-29 years, female 168.3
GTEX-12WSD-2726-SM-59HLR 60-69 years, female 166.9
GTEX-X15G-1726-SM-4PQZN 50-59 years, female 166.0
GTEX-13N11-0526-SM-5IJFI 50-59 years, female 164.6
GTEX-ZAJG-2726-SM-5S2MU 50-59 years, female 164.3
GTEX-1399S-2126-SM-5J2MH 30-39 years, female 159.8
GTEX-1JN76-1426-SM-AHZ4F 20-29 years, female 156.7
GTEX-YJ8O-1026-SM-5CVM5 40-49 years, female 155.2
GTEX-ZYY3-2726-SM-5EGH4 60-69 years, female 154.8
GTEX-1A8FM-2226-SM-7PC1C 50-59 years, female 153.4
GTEX-1LGRB-2326-SM-CNNPU 50-59 years, female 151.6
GTEX-ZC5H-2026-SM-5CVN2 40-49 years, female 149.2
GTEX-14BMU-1726-SM-5TDE8 20-29 years, female 149.1
GTEX-1QP67-1526-SM-E76P4 40-49 years, female 147.1
GTEX-1HCUA-1326-SM-9WPP6 50-59 years, female 146.0
GTEX-1H2FU-2326-SM-9WG7R 60-69 years, female 145.2
GTEX-WEY5-0626-SM-4LMIA 40-49 years, female 143.6
GTEX-15UF6-2026-SM-6LPI3 70-79 years, female 137.9
GTEX-18D9A-0826-SM-718C1 30-39 years, female 135.5
GTEX-1LVAN-2726-SM-CNPQG 50-59 years, female 134.4
GTEX-Q734-0726-SM-48TZP 40-49 years, female 133.2
GTEX-131XG-1926-SM-5LZVG 50-59 years, female 131.1
GTEX-132AR-1426-SM-5IFF1 50-59 years, female 131.0
GTEX-XV7Q-1426-SM-4BRWA 40-49 years, female 129.6
GTEX-1F88F-2126-SM-9KNUK 60-69 years, female 127.4
GTEX-Y3IK-2026-SM-4YCDG 50-59 years, female 112.6
GTEX-1GZHY-2426-SM-9JGGK 50-59 years, female 102.6
GTEX-S7SF-1326-SM-4AD4P 20-29 years, female 91.6
GTEX-1GF9X-2426-SM-7SB7W 40-49 years, female 90.2
Show allShow less

OVARY - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 200.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Ovary
Scaled Tags Per Million: 200.4
FF:10020-101D2 47,75,84 years, female 200.4

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