BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:31.6 nTPM
HPA:31.6 nTPM
GTEx:18.8 nTPM
FANTOM5:98.6 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA040185Antibody HPA041208
Glial cells LowNot detected
Neuronal cells LowMedium





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 31.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 29.3
2289 Male, age 61, right hemisphere 47.4
1854 Male, age 80, left hemisphere 33.7
1857 Female, age 85, left hemisphere 28.4
2481 Female, age 94, left hemisphere 28.2
2290 Female, age 72, unknown 27.3
2846 Female, age 79, unknown 25.9
1781 Male, age 74, unknown 22.1
2288 Male, age 75, left hemisphere 21.0
Claustrum
nTPM: 18.4
2292 Female, age 85, both hemispheres 30.9
2196 Female, age 79, unknown 23.4
1956 Male, age 74, unknown 19.0
2392 Female, age 94, both hemispheres 17.9
2568 Male, age 61, both hemispheres 17.0
2198 Male, age 80, both hemispheres 16.4
2284 Female, age 91, both hemispheres 15.1
2645 Female, age 72, unknown 13.3
2491 Male, age 75, both hemispheres 12.6
Globus pallidus, externus
nTPM: 28.1
2567 Female, age 72, unknown 35.5
2646 Male, age 61, right hemisphere 28.9
1996 Male, age 80, right hemisphere 27.6
2395 Male, age 75, both hemispheres 24.6
2772 Female, age 79, unknown 24.0
Globus pallidus, internus
nTPM: 30.4
2111 Female, age 85, right hemisphere 44.7
2566 Female, age 72, unknown 38.1
2778 Female, age 91, both hemispheres 33.2
2037 Male, age 80, right hemisphere 28.8
1818 Male, age 74, unknown 26.8
2483 Female, age 94, right hemisphere 22.4
2287 Male, age 75, right hemisphere 18.7
Nucleus accumbens
nTPM: 29.7
2824 Male, age 61, right hemisphere 41.6
2391 Female, age 94, left hemisphere 36.4
2732 Male, age 80, right hemisphere 31.3
1806 Female, age 85, left hemisphere 30.8
2698 Female, age 72, unknown 28.0
1856 Female, age 91, right hemisphere 25.5
1783 Male, age 74, unknown 24.0
2286 Male, age 75, left hemisphere 20.0
Nucleus basalis of Meynert
nTPM: 31.6
2484 Female, age 94, left hemisphere 40.9
2393 Male, age 80, right hemisphere 35.1
2569 Male, age 61, both hemispheres 29.0
2821 Male, age 75, both hemispheres 21.3
Nucleus of the diagonal band
nTPM: 12.5
1979 Male, age 74, unknown 22.9
1812 Female, age 91, both hemispheres 12.4
2029 Male, age 61, right hemisphere 9.9
2775 Male, age 80, right hemisphere 8.7
2195 Female, age 85, both hemispheres 8.4
Olfactory tubercle
nTPM: 10.1
2487 Female, age 94, left hemisphere 12.3
1846 Male, age 80, right hemisphere 10.0
2856 Male, age 75, right hemisphere 9.6
1998 Female, age 91, both hemispheres 8.4
Putamen
nTPM: 31.1
2489 Female, age 72, unknown 37.2
2482 Female, age 94, left hemisphere 34.7
1829 Male, age 74, unknown 33.3
1838 Male, age 80, right hemisphere 33.2
1937 Female, age 91, right hemisphere 29.2
2466 Female, age 79, unknown 26.5
2647 Male, age 75, left hemisphere 24.0
Septal nuclei
nTPM: 15.1
2394 Male, age 61, left hemisphere 25.6
2199 Male, age 80, right hemisphere 24.2
2059 Female, age 85, both hemispheres 15.1
2009 Female, age 91, both hemispheres 13.9
2629 Female, age 94, right hemisphere 12.4
1960 Male, age 74, unknown 7.2
2031 Female, age 72, unknown 7.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 18.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 18.6
Samples: 246

Max nTPM: 33.7
Min nTPM: 5.1
Std nTPM: 5.2
Median nTPM: 18.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 33.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 33.2
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 33.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 32.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 30.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 29.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 29.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 29.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 28.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 28.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 28.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 18.8
Samples: 246

Max nTPM: 38.6
Min nTPM: 6.0
Std nTPM: 5.3
Median nTPM: 18.2
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 38.6
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 33.7
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 32.6
GTEX-14C5O-0011-R6a-SM-5YYB6 60-69 years, male 31.3
GTEX-1GN1U-0011-R6a-SM-CKZNO 50-59 years, female 31.1
GTEX-XLM4-0011-R6A-SM-4AT4B 60-69 years, male 30.5
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 30.4
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 30.0
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 29.4
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 29.3
GTEX-1I19N-0011-R6b-SM-CY8GC 70-79 years, male 28.6
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Brain - Putamen (basal ganglia)
Average nTPM: 17.2
Samples: 205

Max nTPM: 37.0
Min nTPM: 6.8
Std nTPM: 5.2
Median nTPM: 16.7
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 37.0
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 32.6
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 31.8
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 31.7
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 31.2
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 29.3
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 28.9
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 28.8
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 28.3
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 27.9
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 27.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 98.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 86.5
FF:10164-103B2 76 years, female 86.5
Globus pallidus
Scaled Tags Per Million: 98.6
FF:10161-103A8 76 years, female 108.0
FF:10175-103C4 60 years, female 89.1
Nucleus accumbens
Scaled Tags Per Million: 59.7
FF:10037-101F1 23-56 years, mixed 59.7
Putamen
Scaled Tags Per Million: 89.2
FF:10176-103C5 60 years, female 89.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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