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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Mouse brain, Intensity
Amygdalai

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
71.227
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:197.6 nTPM
HPA:197.6 nTPM
GTEx:54.8 nTPM
FANTOM5:90.0 Scaled Tags Per Million
Pig:33.4 nTPM

AMYGDALA - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

Read more
, antibody HPA005792
Amygdala mean intensity 71.227
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
FRONT BACK
Nucleus of the lateral olfactory tract -
Basal medial amygdaloid nucleus 57.172
Basal lateral amygdala* -
Basal lateral amygdaloid nucleus 26.678
Cortical amygdala 52.275
Central amygdala 71.227
Medial amygdaloid nucleus -

AMYGDALA - HPA Brain RNA-seq
Max nTPM 197.6
Sample id Sample description nTPM
Amygdala
nTPM: 197.6
2814 Male, age 76, right hemisphere 752.5
2695 Female, age 67, right hemisphere 90.6
2514 Male, age 75, right hemisphere 54.1
1987 Female, age 91, left hemisphere 49.1
2517 Female, age 94, left hemisphere 41.6
Basal amygdala
nTPM: 93.1
1955 Male, age 76, both hemispheres 350.6
2243 Female, age 91, right hemisphere 56.2
2110 Male, age 80, left hemisphere 40.8
2609 Male, age 75, right hemisphere 38.4
2827 Female, age 67, right hemisphere 37.4
2685 Female, age 94, left hemisphere 35.0
Central amygdala
nTPM: 189.0
1905 Male, age 76, both hemispheres 729.3
2701 Female, age 91, right hemisphere 72.3
2515 Male, age 75, right hemisphere 58.2
2826 Female, age 94, left hemisphere 47.3
2239 Male, age 80, left hemisphere 38.0
Corticomedial amygdala
nTPM: 93.1
2240 Male, age 76, both hemispheres 304.0
2829 Male, age 80, left hemisphere 63.5
2242 Female, age 91, right hemisphere 61.3
2429 Female, age 94, left hemisphere 55.9
2428 Male, age 75, right hemisphere 38.2
2535 Female, age 67, right hemisphere 36.0
Lateral amygdala
nTPM: 120.1
1883 Male, age 76, both hemispheres 527.5
2516 Male, age 75, right hemisphere 46.3
2255 Female, age 91, right hemisphere 45.3
2830 Female, age 67, right hemisphere 36.3
2256 Male, age 80, left hemisphere 34.2
2534 Female, age 94, left hemisphere 31.0
Stria terminalis, bed nucleus
nTPM: 76.4
2486 Female, age 94, both hemispheres 115.4
1974 Female, age 91, both hemispheres 67.8
2201 Male, age 74, unknown 45.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 54.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 54.8
Samples: 152

Max nTPM: 277.8
Min nTPM: 8.3
Std nTPM: 45.3
Median nTPM: 41.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 277.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 250.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 216.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 194.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 189.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 175.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 162.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 148.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 141.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 139.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 132.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 124.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 112.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 108.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 108.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 103.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 99.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 98.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 96.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 96.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 93.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 92.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 91.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 90.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 90.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 89.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 89.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 84.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 80.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 76.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 71.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 69.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 66.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 66.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 65.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 64.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 64.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 62.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 62.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 61.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 61.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 60.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 59.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 59.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 58.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 57.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 56.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 56.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 54.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 53.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 52.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 52.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 52.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 52.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 51.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 51.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 51.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 50.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 50.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 50.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 49.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 49.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 49.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 49.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 48.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 47.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 46.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 45.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 44.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 43.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 43.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 43.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 42.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 42.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 42.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 41.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 40.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 40.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 40.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 40.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 40.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 39.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 39.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 38.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 37.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 36.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 35.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 35.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 35.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 35.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 34.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 34.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 33.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 33.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 33.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 32.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 32.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 32.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 31.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 31.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 31.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 31.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 30.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 30.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 29.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 29.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 29.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 29.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 29.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 28.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 28.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 27.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 26.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 26.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 26.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 26.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 26.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 25.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 25.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 25.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 25.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 24.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 24.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 24.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 24.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 23.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 22.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 21.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 21.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 20.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 19.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 19.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 18.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 18.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 18.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 18.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 18.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 17.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 16.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 16.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 16.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 16.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 16.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 16.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 15.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 15.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 15.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 13.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 12.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 9.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 8.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 8.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 90.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 90.0
FF:10151-102I7 76 years, female 90.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 33.4
Pig sample Sample description nTPM
Amygdala
nTPM: 33.4
Samples: 4

Max nTPM: 52.7
Min nTPM: 17.0
Sample A Female 36.6
Sample B Female 52.7
Sample C Male 27.2
Sample D Male 17.0

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