BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:18.5 nTPM
HPA:18.5 nTPM
GTEx:18.5 nTPM
FANTOM5:72.5 Scaled Tags Per Million
Mouse:139.4 nTPM
Allen mouse:0.7 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA036278
Glial cells Medium
Neuronal cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 18.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 15.4
1857 Female, age 85, left hemisphere 21.5
2290 Female, age 72, unknown 19.0
1854 Male, age 80, left hemisphere 17.2
2846 Female, age 79, unknown 15.1
1781 Male, age 74, unknown 13.7
2289 Male, age 61, right hemisphere 13.2
2288 Male, age 75, left hemisphere 12.7
2481 Female, age 94, left hemisphere 10.8
Claustrum
nTPM: 10.2
2568 Male, age 61, both hemispheres 18.0
2198 Male, age 80, both hemispheres 14.4
2645 Female, age 72, unknown 12.1
2284 Female, age 91, both hemispheres 11.3
2392 Female, age 94, both hemispheres 11.3
2491 Male, age 75, both hemispheres 7.6
2196 Female, age 79, unknown 7.1
1956 Male, age 74, unknown 6.2
2292 Female, age 85, both hemispheres 3.7
Globus pallidus, externus
nTPM: 0.4
2772 Female, age 79, unknown 2.1
2395 Male, age 75, both hemispheres 0.1
1996 Male, age 80, right hemisphere 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
Globus pallidus, internus
nTPM: 1.4
2778 Female, age 91, both hemispheres 6.8
1818 Male, age 74, unknown 2.0
2287 Male, age 75, right hemisphere 0.7
2566 Female, age 72, unknown 0.6
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
Nucleus accumbens
nTPM: 16.8
1856 Female, age 91, right hemisphere 29.1
2824 Male, age 61, right hemisphere 28.1
1783 Male, age 74, unknown 22.4
1806 Female, age 85, left hemisphere 17.1
2286 Male, age 75, left hemisphere 14.1
2698 Female, age 72, unknown 12.3
2732 Male, age 80, right hemisphere 6.2
2391 Female, age 94, left hemisphere 5.1
Nucleus basalis of Meynert
nTPM: 7.2
2393 Male, age 80, right hemisphere 15.1
2821 Male, age 75, both hemispheres 6.9
2484 Female, age 94, left hemisphere 6.8
2569 Male, age 61, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 18.5
2195 Female, age 85, both hemispheres 27.2
2775 Male, age 80, right hemisphere 22.2
2029 Male, age 61, right hemisphere 17.0
1812 Female, age 91, both hemispheres 15.1
1979 Male, age 74, unknown 11.0
Olfactory tubercle
nTPM: 14.3
1846 Male, age 80, right hemisphere 16.4
1998 Female, age 91, both hemispheres 15.4
2487 Female, age 94, left hemisphere 15.1
2856 Male, age 75, right hemisphere 10.2
Putamen
nTPM: 16.4
1838 Male, age 80, right hemisphere 26.4
1937 Female, age 91, right hemisphere 22.0
1829 Male, age 74, unknown 17.3
2466 Female, age 79, unknown 16.0
2489 Female, age 72, unknown 15.1
2482 Female, age 94, left hemisphere 9.0
2647 Male, age 75, left hemisphere 8.7
Septal nuclei
nTPM: 14.1
1960 Male, age 74, unknown 27.5
2059 Female, age 85, both hemispheres 17.0
2031 Female, age 72, unknown 13.7
2629 Female, age 94, right hemisphere 11.4
2009 Female, age 91, both hemispheres 11.0
2394 Male, age 61, left hemisphere 10.3
2199 Male, age 80, right hemisphere 8.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 18.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 16.3
Samples: 246

Max nTPM: 42.2
Min nTPM: 1.2
Std nTPM: 8.1
Median nTPM: 14.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 42.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 38.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 37.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 37.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 35.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 35.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 34.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 33.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 33.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 32.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 31.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 18.5
Samples: 246

Max nTPM: 63.1
Min nTPM: 1.0
Std nTPM: 11.4
Median nTPM: 18.2
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 63.1
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 50.1
GTEX-13VXU-0011-R6a-SM-5SI71 50-59 years, male 43.9
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 43.6
GTEX-QVJO-0011-R6A-SM-2S1QN 60-69 years, female 43.5
GTEX-13OVL-0011-R6a-SM-5L3G4 50-59 years, male 43.0
GTEX-1B933-0011-R6b-SM-79OOQ 50-59 years, female 43.0
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 41.8
GTEX-XLM4-0011-R6A-SM-4AT4B 60-69 years, male 40.3
GTEX-1JMLX-0011-R6b-SM-EXUT9 50-59 years, male 39.2
GTEX-15CHQ-0011-R6b-SM-69LOX 60-69 years, male 39.1
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Brain - Putamen (basal ganglia)
Average nTPM: 13.6
Samples: 205

Max nTPM: 35.1
Min nTPM: 2.2
Std nTPM: 7.4
Median nTPM: 12.6
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 35.1
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 32.2
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 32.1
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 31.2
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 31.1
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 30.2
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 29.9
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 28.4
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 27.8
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 27.6
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 27.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 72.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 72.5
FF:10164-103B2 76 years, female 72.5
Globus pallidus
Scaled Tags Per Million: 19.3
FF:10175-103C4 60 years, female 24.4
FF:10161-103A8 76 years, female 14.2
Nucleus accumbens
Scaled Tags Per Million: 47.3
FF:10037-101F1 23-56 years, mixed 47.3
Putamen
Scaled Tags Per Million: 69.8
FF:10176-103C5 60 years, female 69.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 139.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 139.4
Samples: 4

Max nTPM: 146.5
Min nTPM: 132.6
Sample A Male 146.5
Sample B Male 137.4
Sample C Female 141.0
Sample D Female 132.6
Septum
nTPM: 36.0
Samples: 4

Max nTPM: 50.0
Min nTPM: 25.4
Sample A Male 50.0
Sample B Male 25.4
Sample C Female 34.7
Sample D Female 33.7
Ventral forebrain
nTPM: 91.5
Samples: 4

Max nTPM: 104.7
Min nTPM: 83.3
Sample A Male 91.8
Sample B Male 86.3
Sample C Female 83.3
Sample D Female 104.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.7
69540290 Antisense, RP_050426_01_E01, Mouse strain C57BL/6J (56 days, male) 0.7
Pallidum
Expression energy: 0.4
69540290 Antisense, RP_050426_01_E01, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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