MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:119.8 nTPM
HPA:119.8 nTPM
GTEx:108.3 nTPM
FANTOM5:634.2 Scaled Tags Per Million
Pig:356.9 nTPM
Mouse:147.9 nTPM
Allen mouse:1.8 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 119.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 106.4
1870 Female, age 42, unknown 133.9
2828 Female, age 72, unknown 116.3
1833 Male, age 53, unknown 112.2
1830 Male, age 51, unknown 108.4
2019 Male, age 18, unknown 107.2
2219 Male, age 76, both hemispheres 104.1
2411 Female, age 72, unknown 103.2
1827 Male, age 72, unknown 98.8
2666 Male, age 74, left hemisphere 98.0
2586 Male, age 75, left hemisphere 82.0
Dorsal raphe nucleus
nTPM: 108.3
2750 Male, age 76, both hemispheres 114.1
2298 Female, age 72, unknown 113.7
1828 Male, age 53, unknown 110.0
2016 Female, age 72, unknown 107.0
2047 Male, age 72, unknown 96.6
Inferior colliculus
nTPM: 113.7
2097 Female, age 72, unknown 117.4
2849 Male, age 72, unknown 114.4
1890 Male, age 53, unknown 111.9
1848 Female, age 42, unknown 111.0
Median raphe nucleus
nTPM: 111.8
2220 Male, age 76, midline 111.8
Pedunculopontine tegmental nucleus
nTPM: 119.3
2338 Male, age 61, both hemispheres 133.0
2334 Male, age 80, both hemispheres 118.9
1921 Female, age 85, both hemispheres 105.9
Periaquaductal grey, anterior
nTPM: 94.3
2502 Female, age 75, unknown 97.9
1947 Male, age 18, unknown 93.0
1795 Male, age 51, unknown 92.1
Periaquaductal grey, dorsal
nTPM: 106.9
2850 Male, age 76, both hemispheres 117.6
1831 Male, age 72, unknown 110.4
1840 Male, age 53, unknown 102.6
2464 Female, age 72, unknown 97.0
Periaquaductal grey, lateral
nTPM: 112.1
2272 Male, age 74, both hemispheres 116.7
2140 Male, age 76, both hemispheres 112.1
2053 Male, age 18, unknown 107.5
Pretectal area
nTPM: 110.2
2667 Female, age 75, unknown 125.6
2273 Male, age 74, both hemispheres 121.3
2224 Female, age 72, unknown 119.3
1817 Female, age 42, unknown 112.5
1815 Male, age 53, unknown 109.3
2407 Male, age 75, both hemispheres 108.7
2825 Male, age 18, unknown 107.8
2316 Male, age 76, right hemisphere 107.1
1944 Female, age 72, unknown 104.8
1816 Male, age 51, unknown 98.0
2007 Male, age 72, unknown 97.5
Red nucleus
nTPM: 119.8
1865 Male, age 51, unknown 134.8
2769 Male, age 72, unknown 134.1
2227 Male, age 72, unknown 128.7
1821 Female, age 72, unknown 128.6
1904 Male, age 53, unknown 126.0
2823 Male, age 76, right hemisphere 124.6
2503 Female, age 72, unknown 123.3
1954 Female, age 42, unknown 122.7
2725 Female, age 75, unknown 118.8
2785 Male, age 18, unknown 118.8
2584 Male, age 75, left hemisphere 90.4
2588 Male, age 74, left hemisphere 86.7
Substantia nigra
nTPM: 105.7
2699 Male, age 18, unknown 123.2
1851 Male, age 51, unknown 113.5
1889 Female, age 72, unknown 112.5
1916 Female, age 42, unknown 112.5
2665 Male, age 74, both hemispheres 103.2
2590 Female, age 75, unknown 102.7
1941 Male, age 53, unknown 100.7
2241 Male, age 72, unknown 99.7
2583 Male, age 75, right hemisphere 95.1
2409 Female, age 72, unknown 93.9
Superior colliculus
nTPM: 108.0
1913 Female, age 42, unknown 129.9
1995 Male, age 72, unknown 120.5
2587 Male, age 74, left hemisphere 120.5
1796 Male, age 53, unknown 108.1
1895 Male, age 76, right hemisphere 105.7
1839 Male, age 51, unknown 105.5
2087 Female, age 72, unknown 104.7
2261 Male, age 18, unknown 96.4
2664 Male, age 75, both hemispheres 96.4
2668 Female, age 75, unknown 92.7
Ventral tegmental area
nTPM: 109.9
2223 Female, age 72, unknown 121.1
2218 Male, age 76, both hemispheres 117.6
1915 Female, age 42, unknown 108.5
2410 Female, age 72, unknown 106.9
2021 Male, age 53, unknown 103.4
1942 Male, age 51, unknown 101.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 108.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 108.3
Samples: 139

Max nTPM: 225.4
Min nTPM: 38.8
Std nTPM: 33.5
Median nTPM: 108.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 225.4
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 195.5
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 192.9
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 178.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 177.5
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 168.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 166.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 165.5
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 164.2
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 161.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 160.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 634.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 634.2
FF:10158-103A5 76 years, female 634.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 356.9
Pig sample Sample description nTPM
Midbrain
nTPM: 356.9
Samples: 4

Max nTPM: 531.4
Min nTPM: 268.6
Sample A Female 531.4
Sample B Female 350.5
Sample C Male 277.1
Sample D Male 268.6
Periaqueductal gray
nTPM: 310.4
Samples: 3

Max nTPM: 328.8
Min nTPM: 283.5
Sample B Female 319.0
Sample C Male 328.8
Sample D Male 283.5
Substantia nigra
nTPM: 350.0
Samples: 4

Max nTPM: 387.6
Min nTPM: 287.1
Sample A Female 387.6
Sample B Female 287.1
Sample C Male 344.2
Sample D Male 381.1
Superior colliculi
nTPM: 315.7
Samples: 4

Max nTPM: 391.3
Min nTPM: 220.9
Sample A Female 391.3
Sample B Female 220.9
Sample C Male 320.1
Sample D Male 330.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 147.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 147.9
Samples: 4

Max nTPM: 153.5
Min nTPM: 142.9
Sample A Male 153.5
Sample B Male 147.6
Sample C Female 142.9
Sample D Female 147.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.8
69080518 Antisense, RP_050324_02_C07, Mouse strain C57BL/6J (56 days, male) 1.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.