MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:125.4 nTPM
HPA:125.4 nTPM
GTEx:128.0 nTPM
FANTOM5:38.7 Scaled Tags Per Million
Mouse:130.0 nTPM
Allen mouse:2.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 125.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 119.3
2411 Female, age 72, unknown 121.2
2219 Male, age 76, both hemispheres 120.5
1827 Male, age 72, unknown 120.3
1870 Female, age 42, unknown 120.2
2586 Male, age 75, left hemisphere 119.6
2666 Male, age 74, left hemisphere 119.4
2828 Female, age 72, unknown 118.3
1830 Male, age 51, unknown 118.1
2019 Male, age 18, unknown 118.1
1833 Male, age 53, unknown 117.6
Dorsal raphe nucleus
nTPM: 120.5
2298 Female, age 72, unknown 123.8
2750 Male, age 76, both hemispheres 121.5
1828 Male, age 53, unknown 120.3
2047 Male, age 72, unknown 119.0
2016 Female, age 72, unknown 117.6
Inferior colliculus
nTPM: 121.0
2097 Female, age 72, unknown 124.1
1848 Female, age 42, unknown 120.6
1890 Male, age 53, unknown 119.9
2849 Male, age 72, unknown 119.5
Median raphe nucleus
nTPM: 120.0
2220 Male, age 76, midline 120.0
Pedunculopontine tegmental nucleus
nTPM: 122.5
2338 Male, age 61, both hemispheres 123.3
1921 Female, age 85, both hemispheres 122.7
2334 Male, age 80, both hemispheres 121.6
Periaquaductal grey, anterior
nTPM: 120.3
1947 Male, age 18, unknown 120.8
1795 Male, age 51, unknown 120.1
2502 Female, age 75, unknown 120.1
Periaquaductal grey, dorsal
nTPM: 118.4
1840 Male, age 53, unknown 121.5
2464 Female, age 72, unknown 118.9
2850 Male, age 76, both hemispheres 117.7
1831 Male, age 72, unknown 115.4
Periaquaductal grey, lateral
nTPM: 118.2
2053 Male, age 18, unknown 118.5
2140 Male, age 76, both hemispheres 118.0
2272 Male, age 74, both hemispheres 118.0
Pretectal area
nTPM: 120.3
1817 Female, age 42, unknown 123.5
2007 Male, age 72, unknown 122.8
1816 Male, age 51, unknown 122.5
2667 Female, age 75, unknown 122.5
2224 Female, age 72, unknown 121.1
2825 Male, age 18, unknown 120.4
1944 Female, age 72, unknown 119.9
1815 Male, age 53, unknown 119.4
2273 Male, age 74, both hemispheres 118.6
2316 Male, age 76, right hemisphere 117.6
2407 Male, age 75, both hemispheres 114.3
Red nucleus
nTPM: 121.1
1821 Female, age 72, unknown 130.1
1865 Male, age 51, unknown 122.3
2227 Male, age 72, unknown 122.2
1954 Female, age 42, unknown 121.9
1904 Male, age 53, unknown 121.7
2503 Female, age 72, unknown 121.6
2725 Female, age 75, unknown 121.6
2769 Male, age 72, unknown 121.3
2785 Male, age 18, unknown 120.1
2823 Male, age 76, right hemisphere 120.1
2588 Male, age 74, left hemisphere 117.5
2584 Male, age 75, left hemisphere 113.4
Substantia nigra
nTPM: 125.4
1916 Female, age 42, unknown 135.2
1851 Male, age 51, unknown 128.8
1941 Male, age 53, unknown 128.6
2241 Male, age 72, unknown 128.6
2699 Male, age 18, unknown 124.7
1889 Female, age 72, unknown 124.3
2409 Female, age 72, unknown 123.6
2665 Male, age 74, both hemispheres 122.5
2590 Female, age 75, unknown 120.0
2583 Male, age 75, right hemisphere 117.8
Superior colliculus
nTPM: 118.8
1796 Male, age 53, unknown 121.7
1895 Male, age 76, right hemisphere 120.4
2668 Female, age 75, unknown 120.4
2087 Female, age 72, unknown 119.9
2261 Male, age 18, unknown 119.8
2587 Male, age 74, left hemisphere 118.8
1995 Male, age 72, unknown 117.1
1913 Female, age 42, unknown 117.0
1839 Male, age 51, unknown 116.9
2664 Male, age 75, both hemispheres 116.4
Ventral tegmental area
nTPM: 123.1
2410 Female, age 72, unknown 128.5
1915 Female, age 42, unknown 128.3
2218 Male, age 76, both hemispheres 124.4
2223 Female, age 72, unknown 120.9
1942 Male, age 51, unknown 119.5
2021 Male, age 53, unknown 116.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 128.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 128.0
Samples: 139

Max nTPM: 231.2
Min nTPM: 60.6
Std nTPM: 32.6
Median nTPM: 122.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 231.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 229.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 210.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 208.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 201.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 195.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 194.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 192.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 187.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 186.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 186.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 38.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 38.7
FF:10158-103A5 76 years, female 38.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 130.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 130.0
Samples: 4

Max nTPM: 143.2
Min nTPM: 119.1
Sample A Male 143.2
Sample B Male 119.1
Sample C Female 126.4
Sample D Female 131.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.4
75828180 Antisense, RP_060601_01_F04, Mouse strain C57BL/6J (56 days, male) 2.4

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