BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:30.8 nTPM
HPA:30.8 nTPM
GTEx:29.4 nTPM
FANTOM5:53.9 Scaled Tags Per Million
Pig:24.0 nTPM
Mouse:35.3 nTPM
Allen mouse:1.3 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA001825Antibody CAB003857
Glial cells Not detectedMedium
Neuronal cells -Medium





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 30.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 29.8
2481 Female, age 94, left hemisphere 34.1
2288 Male, age 75, left hemisphere 30.3
2846 Female, age 79, unknown 29.7
1781 Male, age 74, unknown 29.6
2290 Female, age 72, unknown 29.5
1854 Male, age 80, left hemisphere 29.1
2289 Male, age 61, right hemisphere 28.4
1857 Female, age 85, left hemisphere 27.7
Claustrum
nTPM: 28.5
2392 Female, age 94, both hemispheres 29.8
2198 Male, age 80, both hemispheres 29.2
2491 Male, age 75, both hemispheres 29.0
1956 Male, age 74, unknown 28.8
2196 Female, age 79, unknown 28.8
2284 Female, age 91, both hemispheres 28.1
2568 Male, age 61, both hemispheres 28.1
2292 Female, age 85, both hemispheres 27.5
2645 Female, age 72, unknown 27.2
Globus pallidus, externus
nTPM: 29.8
2772 Female, age 79, unknown 32.9
1996 Male, age 80, right hemisphere 31.7
2395 Male, age 75, both hemispheres 29.5
2646 Male, age 61, right hemisphere 29.1
2567 Female, age 72, unknown 26.0
Globus pallidus, internus
nTPM: 30.8
2287 Male, age 75, right hemisphere 33.9
2778 Female, age 91, both hemispheres 31.5
2483 Female, age 94, right hemisphere 31.3
1818 Male, age 74, unknown 31.2
2037 Male, age 80, right hemisphere 30.6
2111 Female, age 85, right hemisphere 29.4
2566 Female, age 72, unknown 27.8
Nucleus accumbens
nTPM: 29.4
2286 Male, age 75, left hemisphere 31.6
2698 Female, age 72, unknown 31.3
2391 Female, age 94, left hemisphere 30.7
2824 Male, age 61, right hemisphere 29.6
1806 Female, age 85, left hemisphere 28.3
2732 Male, age 80, right hemisphere 28.3
1856 Female, age 91, right hemisphere 28.2
1783 Male, age 74, unknown 27.3
Nucleus basalis of Meynert
nTPM: 28.8
2393 Male, age 80, right hemisphere 29.7
2484 Female, age 94, left hemisphere 28.7
2821 Male, age 75, both hemispheres 28.6
2569 Male, age 61, both hemispheres 28.1
Nucleus of the diagonal band
nTPM: 29.1
1812 Female, age 91, both hemispheres 30.8
2775 Male, age 80, right hemisphere 30.1
1979 Male, age 74, unknown 28.8
2195 Female, age 85, both hemispheres 28.7
2029 Male, age 61, right hemisphere 27.3
Olfactory tubercle
nTPM: 29.4
1846 Male, age 80, right hemisphere 31.5
1998 Female, age 91, both hemispheres 29.1
2487 Female, age 94, left hemisphere 28.5
2856 Male, age 75, right hemisphere 28.4
Putamen
nTPM: 29.1
2482 Female, age 94, left hemisphere 32.7
1838 Male, age 80, right hemisphere 29.8
1937 Female, age 91, right hemisphere 29.4
1829 Male, age 74, unknown 28.3
2466 Female, age 79, unknown 28.3
2489 Female, age 72, unknown 27.7
2647 Male, age 75, left hemisphere 27.4
Septal nuclei
nTPM: 29.3
2629 Female, age 94, right hemisphere 30.1
2031 Female, age 72, unknown 30.0
2199 Male, age 80, right hemisphere 29.8
1960 Male, age 74, unknown 29.4
2394 Male, age 61, left hemisphere 29.1
2009 Female, age 91, both hemispheres 28.8
2059 Female, age 85, both hemispheres 28.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 29.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 28.5
Samples: 246

Max nTPM: 57.9
Min nTPM: 13.8
Std nTPM: 8.2
Median nTPM: 27.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 57.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 52.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 49.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 48.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 47.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 46.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 44.6
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 44.2
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 44.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 44.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 43.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 28.2
Samples: 246

Max nTPM: 53.3
Min nTPM: 4.8
Std nTPM: 8.3
Median nTPM: 27.5
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 53.3
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 49.5
GTEX-11NUK-0011-R6a-SM-DO93O 50-59 years, male 49.4
GTEX-1GF9V-0011-R6b-SM-CJI2Q 60-69 years, male 47.7
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 47.5
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 46.6
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 46.0
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 46.0
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 45.7
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 45.5
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 44.4
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Brain - Putamen (basal ganglia)
Average nTPM: 29.4
Samples: 205

Max nTPM: 65.3
Min nTPM: 11.2
Std nTPM: 9.1
Median nTPM: 28.5
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 65.3
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 55.1
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 53.3
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 51.8
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 49.9
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 49.1
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 48.8
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 47.8
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 46.8
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 45.1
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 45.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 53.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 49.3
FF:10164-103B2 76 years, female 49.3
Globus pallidus
Scaled Tags Per Million: 53.9
FF:10175-103C4 60 years, female 57.6
FF:10161-103A8 76 years, female 50.2
Nucleus accumbens
Scaled Tags Per Million: 50.5
FF:10037-101F1 23-56 years, mixed 50.5
Putamen
Scaled Tags Per Million: 48.7
FF:10176-103C5 60 years, female 48.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 24.0
Pig sample Sample description nTPM
Caudate
nTPM: 22.6
Samples: 4

Max nTPM: 24.6
Min nTPM: 20.2
Sample A Female 22.5
Sample B Female 23.2
Sample C Male 24.6
Sample D Male 20.2
Putamen
nTPM: 23.9
Samples: 4

Max nTPM: 29.2
Min nTPM: 19.7
Sample A Female 24.2
Sample B Female 19.7
Sample C Male 29.2
Sample D Male 22.6
Septum
nTPM: 24.0
Samples: 4

Max nTPM: 24.4
Min nTPM: 23.3
Sample A Female 23.8
Sample B Female 23.3
Sample C Male 24.4
Sample D Male 24.4
Ventral pallidum
nTPM: 22.5
Samples: 4

Max nTPM: 24.8
Min nTPM: 21.0
Sample A Female 21.0
Sample B Female 24.8
Sample C Male 22.5
Sample D Male 21.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 35.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 35.3
Samples: 4

Max nTPM: 37.5
Min nTPM: 31.4
Sample A Male 31.4
Sample B Male 37.5
Sample C Female 36.2
Sample D Female 36.1
Septum
nTPM: 33.1
Samples: 4

Max nTPM: 38.0
Min nTPM: 26.8
Sample A Male 26.8
Sample B Male 31.9
Sample C Female 38.0
Sample D Female 35.7
Ventral forebrain
nTPM: 31.1
Samples: 4

Max nTPM: 34.7
Min nTPM: 27.9
Sample A Male 29.1
Sample B Male 27.9
Sample C Female 32.5
Sample D Female 34.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.3
68667085 Antisense, RP_050201_01_E11, Mouse strain C57BL/6J (56 days, male) 1.3
Pallidum
Expression energy: 1.1
68667085 Antisense, RP_050201_01_E11, Mouse strain C57BL/6J (56 days, male) 1.1

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