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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:86.7 nTPM
HPA:86.7 nTPM
GTEx:83.3 nTPM
FANTOM5:14.1 Scaled Tags Per Million

AMYGDALA - HPA Brain RNA-seq
Max nTPM 86.7
Sample id Sample description nTPM
Amygdala
nTPM: 80.5
2695 Female, age 67, right hemisphere 86.7
2517 Female, age 94, left hemisphere 82.9
2514 Male, age 75, right hemisphere 79.9
1987 Female, age 91, left hemisphere 79.1
2814 Male, age 76, right hemisphere 73.8
Basal amygdala
nTPM: 83.4
2243 Female, age 91, right hemisphere 102.2
2110 Male, age 80, left hemisphere 87.0
2685 Female, age 94, left hemisphere 81.9
2609 Male, age 75, right hemisphere 80.3
1955 Male, age 76, both hemispheres 76.2
2827 Female, age 67, right hemisphere 73.0
Central amygdala
nTPM: 80.4
2239 Male, age 80, left hemisphere 93.3
2826 Female, age 94, left hemisphere 87.4
2515 Male, age 75, right hemisphere 76.7
2701 Female, age 91, right hemisphere 73.5
1905 Male, age 76, both hemispheres 71.1
Corticomedial amygdala
nTPM: 85.5
2829 Male, age 80, left hemisphere 95.0
2242 Female, age 91, right hemisphere 93.8
2429 Female, age 94, left hemisphere 85.0
2535 Female, age 67, right hemisphere 81.0
2428 Male, age 75, right hemisphere 79.4
2240 Male, age 76, both hemispheres 78.7
Lateral amygdala
nTPM: 81.2
2534 Female, age 94, left hemisphere 95.3
2516 Male, age 75, right hemisphere 82.9
1883 Male, age 76, both hemispheres 80.0
2255 Female, age 91, right hemisphere 77.9
2256 Male, age 80, left hemisphere 76.9
2830 Female, age 67, right hemisphere 74.3
Stria terminalis, bed nucleus
nTPM: 86.7
1974 Female, age 91, both hemispheres 96.9
2486 Female, age 94, both hemispheres 86.4
2201 Male, age 74, unknown 76.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 83.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 83.3
Samples: 152

Max nTPM: 208.9
Min nTPM: 29.6
Std nTPM: 30.2
Median nTPM: 80.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 208.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 194.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 179.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 165.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 152.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 143.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 136.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 131.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 128.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 127.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 126.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 125.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 122.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 122.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 119.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 119.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 118.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 117.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 117.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 117.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 115.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 115.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 113.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 113.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 111.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 111.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 110.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 108.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 106.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 104.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 104.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 102.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 102.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 100.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 99.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 99.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 99.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 97.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 97.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 97.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 96.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 95.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 94.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 94.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 93.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 93.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 92.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 92.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 89.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 89.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 88.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 88.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 88.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 88.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 88.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 88.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 88.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 87.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 86.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 86.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 86.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 85.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 85.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 84.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 84.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 84.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 83.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 83.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 82.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 82.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 82.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 82.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 81.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 81.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 81.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 80.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 80.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 80.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 80.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 80.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 79.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 78.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 77.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 77.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 77.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 76.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 75.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 75.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 75.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 75.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 75.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 74.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 73.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 73.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 73.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 73.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 72.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 71.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 71.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 69.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 69.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 68.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 67.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 67.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 67.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 67.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 66.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 65.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 65.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 65.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 64.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 63.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 62.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 62.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 62.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 62.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 61.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 60.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 60.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 60.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 59.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 59.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 58.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 58.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 57.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 57.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 56.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 56.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 55.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 55.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 55.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 55.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 53.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 53.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 51.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 48.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 47.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 47.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 44.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 44.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 42.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 42.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 41.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 40.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 40.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 40.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 39.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 37.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 35.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 34.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 30.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 29.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 14.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 14.1
FF:10151-102I7 76 years, female 14.1

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