MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:30.0 nTPM
HPA:30.0 nTPM
GTEx:32.6 nTPM
FANTOM5:24.7 Scaled Tags Per Million
Pig:9.5 nTPM
Mouse:22.5 nTPM
Allen mouse:6.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 30.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.2
2586 Male, age 75, left hemisphere 39.8
2666 Male, age 74, left hemisphere 36.1
2828 Female, age 72, unknown 28.6
2019 Male, age 18, unknown 25.8
1833 Male, age 53, unknown 24.6
1830 Male, age 51, unknown 24.2
1827 Male, age 72, unknown 23.7
1870 Female, age 42, unknown 23.4
2411 Female, age 72, unknown 23.2
2219 Male, age 76, both hemispheres 22.5
Dorsal raphe nucleus
nTPM: 30.0
2047 Male, age 72, unknown 33.7
2298 Female, age 72, unknown 30.2
2016 Female, age 72, unknown 29.0
2750 Male, age 76, both hemispheres 28.6
1828 Male, age 53, unknown 28.2
Inferior colliculus
nTPM: 24.5
1890 Male, age 53, unknown 25.6
1848 Female, age 42, unknown 24.6
2849 Male, age 72, unknown 24.3
2097 Female, age 72, unknown 23.3
Median raphe nucleus
nTPM: 29.8
2220 Male, age 76, midline 29.8
Pedunculopontine tegmental nucleus
nTPM: 25.7
2338 Male, age 61, both hemispheres 29.1
2334 Male, age 80, both hemispheres 27.0
1921 Female, age 85, both hemispheres 21.1
Periaquaductal grey, anterior
nTPM: 27.9
1795 Male, age 51, unknown 30.2
1947 Male, age 18, unknown 27.7
2502 Female, age 75, unknown 25.9
Periaquaductal grey, dorsal
nTPM: 24.8
1840 Male, age 53, unknown 27.3
1831 Male, age 72, unknown 24.9
2850 Male, age 76, both hemispheres 24.0
2464 Female, age 72, unknown 23.2
Periaquaductal grey, lateral
nTPM: 24.7
2272 Male, age 74, both hemispheres 25.4
2140 Male, age 76, both hemispheres 25.1
2053 Male, age 18, unknown 23.7
Pretectal area
nTPM: 24.7
1817 Female, age 42, unknown 27.9
2825 Male, age 18, unknown 26.8
2007 Male, age 72, unknown 26.7
1815 Male, age 53, unknown 25.1
2407 Male, age 75, both hemispheres 24.9
1944 Female, age 72, unknown 24.0
1816 Male, age 51, unknown 23.8
2316 Male, age 76, right hemisphere 23.5
2273 Male, age 74, both hemispheres 23.4
2667 Female, age 75, unknown 23.0
2224 Female, age 72, unknown 22.8
Red nucleus
nTPM: 26.0
2584 Male, age 75, left hemisphere 32.2
2725 Female, age 75, unknown 26.5
2227 Male, age 72, unknown 26.4
2769 Male, age 72, unknown 26.2
2785 Male, age 18, unknown 26.1
2823 Male, age 76, right hemisphere 25.8
2588 Male, age 74, left hemisphere 25.6
1954 Female, age 42, unknown 25.4
2503 Female, age 72, unknown 25.3
1865 Male, age 51, unknown 24.7
1904 Male, age 53, unknown 24.4
1821 Female, age 72, unknown 23.5
Substantia nigra
nTPM: 28.4
2665 Male, age 74, both hemispheres 32.8
2583 Male, age 75, right hemisphere 32.7
1916 Female, age 42, unknown 30.4
1851 Male, age 51, unknown 30.0
2699 Male, age 18, unknown 29.1
1941 Male, age 53, unknown 28.2
2590 Female, age 75, unknown 27.7
1889 Female, age 72, unknown 25.8
2241 Male, age 72, unknown 24.4
2409 Female, age 72, unknown 22.7
Superior colliculus
nTPM: 24.6
2664 Male, age 75, both hemispheres 29.4
2668 Female, age 75, unknown 28.0
1995 Male, age 72, unknown 25.3
2087 Female, age 72, unknown 24.9
1913 Female, age 42, unknown 24.3
1796 Male, age 53, unknown 24.1
1839 Male, age 51, unknown 23.6
2261 Male, age 18, unknown 23.5
2587 Male, age 74, left hemisphere 23.4
1895 Male, age 76, right hemisphere 19.9
Ventral tegmental area
nTPM: 28.8
1942 Male, age 51, unknown 31.0
2021 Male, age 53, unknown 30.1
1915 Female, age 42, unknown 29.4
2223 Female, age 72, unknown 28.5
2410 Female, age 72, unknown 27.1
2218 Male, age 76, both hemispheres 26.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 32.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.6
Samples: 139

Max nTPM: 79.9
Min nTPM: 16.4
Std nTPM: 9.7
Median nTPM: 31.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 79.9
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 67.3
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 66.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 60.4
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 54.4
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 54.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 53.6
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 49.7
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 47.7
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 47.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 47.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.7
FF:10158-103A5 76 years, female 24.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 9.5
Pig sample Sample description nTPM
Midbrain
nTPM: 9.5
Samples: 4

Max nTPM: 10.4
Min nTPM: 8.3
Sample A Female 10.0
Sample B Female 8.3
Sample C Male 10.4
Sample D Male 9.4
Periaqueductal gray
nTPM: 8.5
Samples: 3

Max nTPM: 9.4
Min nTPM: 7.8
Sample B Female 8.2
Sample C Male 9.4
Sample D Male 7.8
Substantia nigra
nTPM: 9.4
Samples: 4

Max nTPM: 10.5
Min nTPM: 8.3
Sample A Female 9.6
Sample B Female 8.3
Sample C Male 10.5
Sample D Male 9.0
Superior colliculi
nTPM: 9.2
Samples: 4

Max nTPM: 10.3
Min nTPM: 7.2
Sample A Female 9.4
Sample B Female 7.2
Sample C Male 9.9
Sample D Male 10.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 22.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.5
Samples: 4

Max nTPM: 24.9
Min nTPM: 21.3
Sample A Male 24.9
Sample B Male 21.3
Sample C Female 22.0
Sample D Female 21.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.7
2323 Antisense, RP_040507_02_A11, Mouse strain C57BL/6J (56 days, male) 6.7
2324 Antisense, RP_040507_02_A11, Mouse strain C57BL/6J (56 days, male) 4.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.