MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:52.1 nTPM
HPA:52.1 nTPM
GTEx:24.4 nTPM
FANTOM5:80.4 Scaled Tags Per Million
Pig:230.0 nTPM
Mouse:65.7 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 52.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.1
2019 Male, age 18, unknown 61.8
1830 Male, age 51, unknown 57.5
2411 Female, age 72, unknown 54.2
1827 Male, age 72, unknown 43.5
1833 Male, age 53, unknown 39.5
2828 Female, age 72, unknown 39.3
1870 Female, age 42, unknown 39.2
2586 Male, age 75, left hemisphere 23.9
2666 Male, age 74, left hemisphere 21.1
2219 Male, age 76, both hemispheres 11.5
Dorsal raphe nucleus
nTPM: 19.8
2750 Male, age 76, both hemispheres 36.0
1828 Male, age 53, unknown 32.3
2016 Female, age 72, unknown 24.4
2047 Male, age 72, unknown 6.5
2298 Female, age 72, unknown 0.0
Inferior colliculus
nTPM: 18.3
2097 Female, age 72, unknown 21.1
1848 Female, age 42, unknown 20.2
2849 Male, age 72, unknown 16.0
1890 Male, age 53, unknown 15.9
Median raphe nucleus
nTPM: 0.0
2220 Male, age 76, midline 0.0
Pedunculopontine tegmental nucleus
nTPM: 32.3
2334 Male, age 80, both hemispheres 42.4
1921 Female, age 85, both hemispheres 30.6
2338 Male, age 61, both hemispheres 23.9
Periaquaductal grey, anterior
nTPM: 28.7
1947 Male, age 18, unknown 52.9
2502 Female, age 75, unknown 27.5
1795 Male, age 51, unknown 5.7
Periaquaductal grey, dorsal
nTPM: 8.8
2464 Female, age 72, unknown 31.8
1831 Male, age 72, unknown 3.3
1840 Male, age 53, unknown 0.0
2850 Male, age 76, both hemispheres 0.0
Periaquaductal grey, lateral
nTPM: 4.5
2272 Male, age 74, both hemispheres 10.6
2053 Male, age 18, unknown 2.9
2140 Male, age 76, both hemispheres 0.0
Pretectal area
nTPM: 27.2
1817 Female, age 42, unknown 51.8
2007 Male, age 72, unknown 48.5
1815 Male, age 53, unknown 41.2
2316 Male, age 76, right hemisphere 33.1
2667 Female, age 75, unknown 26.1
2407 Male, age 75, both hemispheres 24.5
1816 Male, age 51, unknown 23.2
1944 Female, age 72, unknown 17.1
2224 Female, age 72, unknown 12.9
2825 Male, age 18, unknown 10.8
2273 Male, age 74, both hemispheres 9.9
Red nucleus
nTPM: 52.1
1865 Male, age 51, unknown 71.1
2503 Female, age 72, unknown 66.4
2785 Male, age 18, unknown 66.3
2823 Male, age 76, right hemisphere 58.9
1821 Female, age 72, unknown 58.0
2588 Male, age 74, left hemisphere 55.2
1954 Female, age 42, unknown 48.6
1904 Male, age 53, unknown 48.4
2769 Male, age 72, unknown 46.5
2227 Male, age 72, unknown 45.2
2725 Female, age 75, unknown 41.8
2584 Male, age 75, left hemisphere 18.5
Substantia nigra
nTPM: 20.3
2409 Female, age 72, unknown 42.4
2583 Male, age 75, right hemisphere 37.1
1889 Female, age 72, unknown 36.6
1941 Male, age 53, unknown 25.5
2590 Female, age 75, unknown 25.2
1851 Male, age 51, unknown 19.3
2665 Male, age 74, both hemispheres 9.2
2699 Male, age 18, unknown 5.6
2241 Male, age 72, unknown 2.5
1916 Female, age 42, unknown 0.0
Superior colliculus
nTPM: 29.0
1995 Male, age 72, unknown 52.5
1913 Female, age 42, unknown 50.6
1895 Male, age 76, right hemisphere 41.7
1839 Male, age 51, unknown 33.8
2587 Male, age 74, left hemisphere 31.6
2668 Female, age 75, unknown 27.0
1796 Male, age 53, unknown 22.2
2087 Female, age 72, unknown 15.5
2261 Male, age 18, unknown 9.8
2664 Male, age 75, both hemispheres 5.6
Ventral tegmental area
nTPM: 20.1
2410 Female, age 72, unknown 52.2
2223 Female, age 72, unknown 29.9
2218 Male, age 76, both hemispheres 11.5
1915 Female, age 42, unknown 9.9
1942 Male, age 51, unknown 9.9
2021 Male, age 53, unknown 6.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 24.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.4
Samples: 139

Max nTPM: 49.1
Min nTPM: 12.3
Std nTPM: 7.6
Median nTPM: 22.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 49.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 45.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 44.2
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 43.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 42.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 40.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 40.2
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 39.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 38.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 37.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 37.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 80.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 80.4
FF:10158-103A5 76 years, female 80.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 230.0
Pig sample Sample description nTPM
Midbrain
nTPM: 230.0
Samples: 4

Max nTPM: 280.2
Min nTPM: 187.4
Sample A Female 280.2
Sample B Female 242.3
Sample C Male 210.2
Sample D Male 187.4
Periaqueductal gray
nTPM: 175.5
Samples: 3

Max nTPM: 225.6
Min nTPM: 116.2
Sample B Female 225.6
Sample C Male 116.2
Sample D Male 184.7
Substantia nigra
nTPM: 199.3
Samples: 4

Max nTPM: 309.0
Min nTPM: 147.1
Sample A Female 176.3
Sample B Female 147.1
Sample C Male 164.6
Sample D Male 309.0
Superior colliculi
nTPM: 197.5
Samples: 4

Max nTPM: 262.7
Min nTPM: 124.0
Sample A Female 171.2
Sample B Female 124.0
Sample C Male 262.7
Sample D Male 232.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 65.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 65.7
Samples: 4

Max nTPM: 74.2
Min nTPM: 53.4
Sample A Male 53.4
Sample B Male 65.4
Sample C Female 74.2
Sample D Female 69.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
10 Antisense, RP_Baylor_103355, Mouse strain C57BL/6J (56 days, male) 0.5
71152431 Antisense, RP_050719_04_A03, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.