BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:73.2 nTPM
HPA:73.2 nTPM
GTEx:77.7 nTPM
FANTOM5:179.3 Scaled Tags Per Million
Pig:7.8 nTPM

CAUDATE - Antibody stainingi
Antibody HPA059058
Glial cells Not detected
Neuronal cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 73.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 54.2
2290 Female, age 72, unknown 58.0
2846 Female, age 79, unknown 57.8
2288 Male, age 75, left hemisphere 57.7
1781 Male, age 74, unknown 54.9
1857 Female, age 85, left hemisphere 53.9
2481 Female, age 94, left hemisphere 53.7
1854 Male, age 80, left hemisphere 49.8
2289 Male, age 61, right hemisphere 47.7
Claustrum
nTPM: 61.0
2284 Female, age 91, both hemispheres 67.1
2198 Male, age 80, both hemispheres 65.8
2491 Male, age 75, both hemispheres 64.1
1956 Male, age 74, unknown 61.9
2645 Female, age 72, unknown 61.1
2392 Female, age 94, both hemispheres 59.1
2568 Male, age 61, both hemispheres 58.4
2196 Female, age 79, unknown 56.2
2292 Female, age 85, both hemispheres 55.4
Globus pallidus, externus
nTPM: 47.8
2772 Female, age 79, unknown 52.9
2395 Male, age 75, both hemispheres 49.3
1996 Male, age 80, right hemisphere 46.6
2646 Male, age 61, right hemisphere 45.6
2567 Female, age 72, unknown 44.7
Globus pallidus, internus
nTPM: 48.4
1818 Male, age 74, unknown 52.3
2483 Female, age 94, right hemisphere 51.7
2287 Male, age 75, right hemisphere 50.1
2037 Male, age 80, right hemisphere 48.2
2566 Female, age 72, unknown 46.8
2778 Female, age 91, both hemispheres 45.1
2111 Female, age 85, right hemisphere 44.3
Nucleus accumbens
nTPM: 56.6
1856 Female, age 91, right hemisphere 72.6
1783 Male, age 74, unknown 57.1
2698 Female, age 72, unknown 56.5
2286 Male, age 75, left hemisphere 56.0
2824 Male, age 61, right hemisphere 56.0
1806 Female, age 85, left hemisphere 53.7
2732 Male, age 80, right hemisphere 52.0
2391 Female, age 94, left hemisphere 49.2
Nucleus basalis of Meynert
nTPM: 52.4
2821 Male, age 75, both hemispheres 59.1
2484 Female, age 94, left hemisphere 54.1
2393 Male, age 80, right hemisphere 51.3
2569 Male, age 61, both hemispheres 45.2
Nucleus of the diagonal band
nTPM: 73.2
1812 Female, age 91, both hemispheres 78.1
2195 Female, age 85, both hemispheres 76.2
2775 Male, age 80, right hemisphere 74.7
1979 Male, age 74, unknown 68.8
2029 Male, age 61, right hemisphere 68.3
Olfactory tubercle
nTPM: 71.2
2487 Female, age 94, left hemisphere 78.6
1998 Female, age 91, both hemispheres 74.5
2856 Male, age 75, right hemisphere 67.9
1846 Male, age 80, right hemisphere 63.8
Putamen
nTPM: 55.2
1937 Female, age 91, right hemisphere 66.9
2466 Female, age 79, unknown 57.7
1838 Male, age 80, right hemisphere 56.7
1829 Male, age 74, unknown 54.8
2482 Female, age 94, left hemisphere 52.1
2489 Female, age 72, unknown 49.8
2647 Male, age 75, left hemisphere 48.2
Septal nuclei
nTPM: 67.5
1960 Male, age 74, unknown 78.4
2031 Female, age 72, unknown 72.8
2009 Female, age 91, both hemispheres 71.9
2629 Female, age 94, right hemisphere 71.8
2059 Female, age 85, both hemispheres 65.7
2199 Male, age 80, right hemisphere 59.7
2394 Male, age 61, left hemisphere 51.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 77.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 57.1
Samples: 246

Max nTPM: 226.8
Min nTPM: 11.5
Std nTPM: 33.0
Median nTPM: 52.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 226.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 181.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 151.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 140.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 137.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 133.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 128.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 128.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 125.5
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 122.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 121.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 77.7
Samples: 246

Max nTPM: 212.1
Min nTPM: 11.4
Std nTPM: 33.9
Median nTPM: 78.2
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 212.1
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 190.4
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 177.4
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 143.8
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 143.5
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 142.3
GTEX-TSE9-0011-R6A-SM-3DB7L 60-69 years, female 139.4
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 137.7
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 137.4
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 137.2
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 134.9
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Brain - Putamen (basal ganglia)
Average nTPM: 57.3
Samples: 205

Max nTPM: 155.6
Min nTPM: 10.3
Std nTPM: 32.4
Median nTPM: 51.3
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 155.6
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 149.0
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 138.9
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 134.5
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 132.6
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 129.1
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 124.9
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 121.8
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 121.8
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 118.8
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 118.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 179.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 76.7
FF:10164-103B2 76 years, female 76.7
Globus pallidus
Scaled Tags Per Million: 63.2
FF:10175-103C4 60 years, female 98.6
FF:10161-103A8 76 years, female 27.8
Nucleus accumbens
Scaled Tags Per Million: 148.9
FF:10037-101F1 23-56 years, mixed 148.9
Putamen
Scaled Tags Per Million: 179.3
FF:10176-103C5 60 years, female 179.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 7.8
Pig sample Sample description nTPM
Caudate
nTPM: 2.5
Samples: 4

Max nTPM: 2.9
Min nTPM: 1.8
Sample A Female 2.9
Sample B Female 2.9
Sample C Male 2.3
Sample D Male 1.8
Putamen
nTPM: 2.9
Samples: 4

Max nTPM: 4.2
Min nTPM: 2.2
Sample A Female 2.9
Sample B Female 2.4
Sample C Male 4.2
Sample D Male 2.2
Septum
nTPM: 7.9
Samples: 4

Max nTPM: 12.7
Min nTPM: 4.9
Sample A Female 4.9
Sample B Female 5.8
Sample C Male 12.7
Sample D Male 8.0
Ventral pallidum
nTPM: 3.8
Samples: 4

Max nTPM: 4.8
Min nTPM: 2.3
Sample A Female 4.1
Sample B Female 4.1
Sample C Male 4.8
Sample D Male 2.3

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The Human Protein Atlas

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