MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:62.0 nTPM
HPA:62.0 nTPM
GTEx:55.1 nTPM
FANTOM5:98.1 Scaled Tags Per Million
Pig:71.6 nTPM
Mouse:16.3 nTPM
Allen mouse:6.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 62.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 60.6
2586 Male, age 75, left hemisphere 103.2
2828 Female, age 72, unknown 68.5
2666 Male, age 74, left hemisphere 64.2
1870 Female, age 42, unknown 56.0
2019 Male, age 18, unknown 55.8
1827 Male, age 72, unknown 55.5
1830 Male, age 51, unknown 53.1
1833 Male, age 53, unknown 52.4
2219 Male, age 76, both hemispheres 50.1
2411 Female, age 72, unknown 47.2
Dorsal raphe nucleus
nTPM: 60.5
2047 Male, age 72, unknown 70.2
1828 Male, age 53, unknown 68.6
2016 Female, age 72, unknown 61.9
2298 Female, age 72, unknown 53.1
2750 Male, age 76, both hemispheres 48.5
Inferior colliculus
nTPM: 49.9
2849 Male, age 72, unknown 54.5
1890 Male, age 53, unknown 52.9
1848 Female, age 42, unknown 51.7
2097 Female, age 72, unknown 40.7
Median raphe nucleus
nTPM: 55.6
2220 Male, age 76, midline 55.6
Pedunculopontine tegmental nucleus
nTPM: 52.6
2338 Male, age 61, both hemispheres 60.3
2334 Male, age 80, both hemispheres 53.9
1921 Female, age 85, both hemispheres 43.7
Periaquaductal grey, anterior
nTPM: 51.9
1795 Male, age 51, unknown 57.4
1947 Male, age 18, unknown 51.3
2502 Female, age 75, unknown 47.1
Periaquaductal grey, dorsal
nTPM: 58.4
2850 Male, age 76, both hemispheres 71.5
1840 Male, age 53, unknown 58.7
1831 Male, age 72, unknown 54.3
2464 Female, age 72, unknown 49.1
Periaquaductal grey, lateral
nTPM: 62.0
2140 Male, age 76, both hemispheres 72.9
2053 Male, age 18, unknown 59.4
2272 Male, age 74, both hemispheres 53.6
Pretectal area
nTPM: 51.7
2407 Male, age 75, both hemispheres 63.1
2825 Male, age 18, unknown 59.1
1817 Female, age 42, unknown 52.1
2224 Female, age 72, unknown 52.1
2273 Male, age 74, both hemispheres 51.6
2316 Male, age 76, right hemisphere 51.3
1815 Male, age 53, unknown 49.7
2007 Male, age 72, unknown 49.5
2667 Female, age 75, unknown 47.2
1944 Female, age 72, unknown 47.0
1816 Male, age 51, unknown 45.8
Red nucleus
nTPM: 58.1
2584 Male, age 75, left hemisphere 77.4
2725 Female, age 75, unknown 65.6
2588 Male, age 74, left hemisphere 60.9
1865 Male, age 51, unknown 58.9
2823 Male, age 76, right hemisphere 57.4
1821 Female, age 72, unknown 55.5
2769 Male, age 72, unknown 55.5
1954 Female, age 42, unknown 55.3
2785 Male, age 18, unknown 54.1
2227 Male, age 72, unknown 53.6
2503 Female, age 72, unknown 51.8
1904 Male, age 53, unknown 51.2
Substantia nigra
nTPM: 54.8
2583 Male, age 75, right hemisphere 67.9
2699 Male, age 18, unknown 67.8
2665 Male, age 74, both hemispheres 61.1
1851 Male, age 51, unknown 55.0
1916 Female, age 42, unknown 54.3
1889 Female, age 72, unknown 52.5
2590 Female, age 75, unknown 51.8
2241 Male, age 72, unknown 49.6
1941 Male, age 53, unknown 48.3
2409 Female, age 72, unknown 39.7
Superior colliculus
nTPM: 53.2
2664 Male, age 75, both hemispheres 68.3
1995 Male, age 72, unknown 58.6
2668 Female, age 75, unknown 58.2
1796 Male, age 53, unknown 56.4
1839 Male, age 51, unknown 54.5
2587 Male, age 74, left hemisphere 52.8
1913 Female, age 42, unknown 50.9
2087 Female, age 72, unknown 47.3
2261 Male, age 18, unknown 43.2
1895 Male, age 76, right hemisphere 42.2
Ventral tegmental area
nTPM: 61.5
2223 Female, age 72, unknown 72.2
2021 Male, age 53, unknown 67.4
1942 Male, age 51, unknown 63.8
1915 Female, age 42, unknown 63.4
2218 Male, age 76, both hemispheres 52.6
2410 Female, age 72, unknown 49.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 55.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 55.1
Samples: 139

Max nTPM: 129.5
Min nTPM: 21.3
Std nTPM: 16.3
Median nTPM: 52.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 129.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 124.7
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 103.4
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 96.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 87.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 86.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 85.9
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 81.5
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 80.1
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 77.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 77.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 98.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 98.1
FF:10158-103A5 76 years, female 98.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 71.6
Pig sample Sample description nTPM
Midbrain
nTPM: 64.7
Samples: 4

Max nTPM: 117.9
Min nTPM: 42.7
Sample A Female 117.9
Sample B Female 50.5
Sample C Male 47.7
Sample D Male 42.7
Periaqueductal gray
nTPM: 53.8
Samples: 3

Max nTPM: 62.5
Min nTPM: 48.8
Sample B Female 48.8
Sample C Male 62.5
Sample D Male 50.0
Substantia nigra
nTPM: 71.6
Samples: 4

Max nTPM: 77.2
Min nTPM: 66.4
Sample A Female 76.2
Sample B Female 66.7
Sample C Male 66.4
Sample D Male 77.2
Superior colliculi
nTPM: 58.1
Samples: 4

Max nTPM: 67.2
Min nTPM: 51.6
Sample A Female 67.2
Sample B Female 55.4
Sample C Male 51.6
Sample D Male 58.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 16.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 16.3
Samples: 4

Max nTPM: 17.1
Min nTPM: 15.1
Sample A Male 15.1
Sample B Male 16.9
Sample C Female 17.1
Sample D Female 16.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.6
69262288 Antisense, RP_050303_01_F05, Mouse strain C57BL/6J (56 days, male) 6.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.