MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:31.2 nTPM
HPA:31.2 nTPM
GTEx:58.7 nTPM
FANTOM5:62.6 Scaled Tags Per Million
Pig:17.4 nTPM
Mouse:85.5 nTPM
Allen mouse:3.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 31.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.1
2586 Male, age 75, left hemisphere 32.7
2666 Male, age 74, left hemisphere 31.6
2828 Female, age 72, unknown 30.8
1870 Female, age 42, unknown 30.1
1827 Male, age 72, unknown 30.0
2411 Female, age 72, unknown 29.9
2019 Male, age 18, unknown 29.6
1833 Male, age 53, unknown 29.5
1830 Male, age 51, unknown 29.3
2219 Male, age 76, both hemispheres 28.0
Dorsal raphe nucleus
nTPM: 30.4
2298 Female, age 72, unknown 31.3
1828 Male, age 53, unknown 30.9
2016 Female, age 72, unknown 30.3
2047 Male, age 72, unknown 30.2
2750 Male, age 76, both hemispheres 29.3
Inferior colliculus
nTPM: 29.3
1890 Male, age 53, unknown 29.6
2097 Female, age 72, unknown 29.5
2849 Male, age 72, unknown 29.1
1848 Female, age 42, unknown 28.9
Median raphe nucleus
nTPM: 29.8
2220 Male, age 76, midline 29.8
Pedunculopontine tegmental nucleus
nTPM: 29.2
2334 Male, age 80, both hemispheres 29.6
2338 Male, age 61, both hemispheres 29.5
1921 Female, age 85, both hemispheres 28.6
Periaquaductal grey, anterior
nTPM: 30.8
1795 Male, age 51, unknown 31.1
1947 Male, age 18, unknown 30.6
2502 Female, age 75, unknown 30.6
Periaquaductal grey, dorsal
nTPM: 29.6
2850 Male, age 76, both hemispheres 30.4
1840 Male, age 53, unknown 30.0
1831 Male, age 72, unknown 29.3
2464 Female, age 72, unknown 28.8
Periaquaductal grey, lateral
nTPM: 29.0
2140 Male, age 76, both hemispheres 29.9
2053 Male, age 18, unknown 29.0
2272 Male, age 74, both hemispheres 28.1
Pretectal area
nTPM: 29.8
1817 Female, age 42, unknown 31.1
1816 Male, age 51, unknown 31.0
2007 Male, age 72, unknown 30.8
2407 Male, age 75, both hemispheres 30.1
1944 Female, age 72, unknown 30.0
1815 Male, age 53, unknown 29.9
2825 Male, age 18, unknown 29.9
2667 Female, age 75, unknown 29.3
2224 Female, age 72, unknown 29.2
2273 Male, age 74, both hemispheres 28.7
2316 Male, age 76, right hemisphere 28.1
Red nucleus
nTPM: 30.1
2584 Male, age 75, left hemisphere 32.3
2769 Male, age 72, unknown 30.4
2725 Female, age 75, unknown 30.3
1821 Female, age 72, unknown 30.2
2227 Male, age 72, unknown 30.2
1904 Male, age 53, unknown 30.0
1954 Female, age 42, unknown 29.8
2503 Female, age 72, unknown 29.8
2785 Male, age 18, unknown 29.8
1865 Male, age 51, unknown 29.6
2588 Male, age 74, left hemisphere 29.6
2823 Male, age 76, right hemisphere 28.7
Substantia nigra
nTPM: 31.2
1916 Female, age 42, unknown 34.0
1851 Male, age 51, unknown 32.1
2665 Male, age 74, both hemispheres 32.1
2583 Male, age 75, right hemisphere 31.7
2699 Male, age 18, unknown 31.4
2590 Female, age 75, unknown 30.8
2241 Male, age 72, unknown 30.4
1889 Female, age 72, unknown 30.3
1941 Male, age 53, unknown 30.2
2409 Female, age 72, unknown 29.1
Superior colliculus
nTPM: 29.8
2664 Male, age 75, both hemispheres 31.8
2668 Female, age 75, unknown 30.5
1796 Male, age 53, unknown 30.4
2261 Male, age 18, unknown 30.2
2087 Female, age 72, unknown 29.9
2587 Male, age 74, left hemisphere 29.9
1995 Male, age 72, unknown 29.6
1839 Male, age 51, unknown 29.0
1913 Female, age 42, unknown 28.8
1895 Male, age 76, right hemisphere 28.4
Ventral tegmental area
nTPM: 30.3
1915 Female, age 42, unknown 31.6
2410 Female, age 72, unknown 31.5
1942 Male, age 51, unknown 30.1
2021 Male, age 53, unknown 29.8
2218 Male, age 76, both hemispheres 29.6
2223 Female, age 72, unknown 29.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 58.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 58.7
Samples: 139

Max nTPM: 117.5
Min nTPM: 32.6
Std nTPM: 13.7
Median nTPM: 56.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 117.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 102.3
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 99.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 95.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 94.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 89.8
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 88.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 85.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 84.0
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 82.0
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 77.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 62.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 62.6
FF:10158-103A5 76 years, female 62.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 17.4
Pig sample Sample description nTPM
Midbrain
nTPM: 16.5
Samples: 4

Max nTPM: 21.8
Min nTPM: 13.4
Sample A Female 21.8
Sample B Female 15.7
Sample C Male 14.9
Sample D Male 13.4
Periaqueductal gray
nTPM: 14.4
Samples: 3

Max nTPM: 15.8
Min nTPM: 12.3
Sample B Female 15.0
Sample C Male 15.8
Sample D Male 12.3
Substantia nigra
nTPM: 16.5
Samples: 4

Max nTPM: 21.2
Min nTPM: 14.3
Sample A Female 21.2
Sample B Female 15.0
Sample C Male 15.3
Sample D Male 14.3
Superior colliculi
nTPM: 17.4
Samples: 4

Max nTPM: 20.6
Min nTPM: 14.9
Sample A Female 20.6
Sample B Female 18.1
Sample C Male 15.9
Sample D Male 14.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 85.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 85.5
Samples: 4

Max nTPM: 89.0
Min nTPM: 82.0
Sample A Male 89.0
Sample B Male 82.0
Sample C Female 83.2
Sample D Female 87.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.9
513478 Antisense, RP_040810_01_G08, Mouse strain C57BL/6J (56 days, male) 3.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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