BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:37.9 nTPM
HPA:37.9 nTPM
GTEx:27.3 nTPM
FANTOM5:44.4 Scaled Tags Per Million
Pig:37.3 nTPM
Mouse:15.3 nTPM
Allen mouse:3.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA013624
Glial cells Low
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 37.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 6.7
1781 Male, age 74, unknown 16.4
2288 Male, age 75, left hemisphere 12.2
2846 Female, age 79, unknown 9.9
1857 Female, age 85, left hemisphere 6.3
2290 Female, age 72, unknown 5.9
2289 Male, age 61, right hemisphere 2.7
1854 Male, age 80, left hemisphere 0.0
2481 Female, age 94, left hemisphere 0.0
Claustrum
nTPM: 10.6
2491 Male, age 75, both hemispheres 24.7
2568 Male, age 61, both hemispheres 15.8
2392 Female, age 94, both hemispheres 11.8
1956 Male, age 74, unknown 11.2
2284 Female, age 91, both hemispheres 11.1
2645 Female, age 72, unknown 10.9
2198 Male, age 80, both hemispheres 9.6
2196 Female, age 79, unknown 0.0
2292 Female, age 85, both hemispheres 0.0
Globus pallidus, externus
nTPM: 0.0
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.0
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 5.3
1856 Female, age 91, right hemisphere 14.2
1783 Male, age 74, unknown 11.7
2824 Male, age 61, right hemisphere 7.0
1806 Female, age 85, left hemisphere 5.8
2286 Male, age 75, left hemisphere 3.9
2391 Female, age 94, left hemisphere 0.0
2698 Female, age 72, unknown 0.0
2732 Male, age 80, right hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 0.7
2484 Female, age 94, left hemisphere 3.1
2393 Male, age 80, right hemisphere 0.0
2569 Male, age 61, both hemispheres 0.0
2821 Male, age 75, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 27.8
2029 Male, age 61, right hemisphere 45.4
2775 Male, age 80, right hemisphere 34.9
1812 Female, age 91, both hemispheres 32.9
2195 Female, age 85, both hemispheres 25.7
1979 Male, age 74, unknown 0.0
Olfactory tubercle
nTPM: 37.9
2487 Female, age 94, left hemisphere 52.5
1998 Female, age 91, both hemispheres 40.2
2856 Male, age 75, right hemisphere 37.7
1846 Male, age 80, right hemisphere 21.3
Putamen
nTPM: 8.1
2466 Female, age 79, unknown 15.3
2647 Male, age 75, left hemisphere 12.3
1829 Male, age 74, unknown 10.8
1937 Female, age 91, right hemisphere 8.3
2489 Female, age 72, unknown 7.3
1838 Male, age 80, right hemisphere 2.7
2482 Female, age 94, left hemisphere 0.0
Septal nuclei
nTPM: 21.2
1960 Male, age 74, unknown 40.9
2629 Female, age 94, right hemisphere 36.9
2031 Female, age 72, unknown 35.3
2009 Female, age 91, both hemispheres 22.9
2059 Female, age 85, both hemispheres 12.4
2199 Male, age 80, right hemisphere 0.0
2394 Male, age 61, left hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 27.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 24.6
Samples: 246

Max nTPM: 85.4
Min nTPM: 3.3
Std nTPM: 13.0
Median nTPM: 24.0
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 85.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 54.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 53.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 53.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 51.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 50.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 49.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 47.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 47.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 46.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 46.5
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 27.3
Samples: 246

Max nTPM: 59.2
Min nTPM: 1.0
Std nTPM: 13.0
Median nTPM: 28.5
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 59.2
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 58.0
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 53.3
GTEX-17EVP-0011-R6b-SM-7LT99 40-49 years, male 52.0
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 51.1
GTEX-15RJE-0011-R6a-SM-7DHL8 40-49 years, male 50.2
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 50.0
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 49.8
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 49.4
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 49.4
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 48.8
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 24.5
Samples: 205

Max nTPM: 60.5
Min nTPM: 2.3
Std nTPM: 13.6
Median nTPM: 24.1
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 60.5
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 56.9
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 56.7
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 56.0
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 53.7
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 52.7
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 50.6
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 50.3
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 48.2
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 48.2
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 48.0
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 44.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 15.8
FF:10164-103B2 76 years, female 15.8
Globus pallidus
Scaled Tags Per Million: 7.5
FF:10175-103C4 60 years, female 12.6
FF:10161-103A8 76 years, female 2.5
Nucleus accumbens
Scaled Tags Per Million: 44.4
FF:10037-101F1 23-56 years, mixed 44.4
Putamen
Scaled Tags Per Million: 32.2
FF:10176-103C5 60 years, female 32.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 37.3
Pig sample Sample description nTPM
Caudate
nTPM: 34.3
Samples: 4

Max nTPM: 45.5
Min nTPM: 21.6
Sample A Female 21.6
Sample B Female 29.3
Sample C Male 45.5
Sample D Male 40.8
Putamen
nTPM: 37.4
Samples: 4

Max nTPM: 59.9
Min nTPM: 11.5
Sample A Female 11.5
Sample B Female 34.5
Sample C Male 59.9
Sample D Male 43.5
Septum
nTPM: 18.7
Samples: 4

Max nTPM: 21.8
Min nTPM: 13.8
Sample A Female 21.7
Sample B Female 21.8
Sample C Male 13.8
Sample D Male 17.5
Ventral pallidum
nTPM: 21.3
Samples: 4

Max nTPM: 27.9
Min nTPM: 16.8
Sample A Female 27.9
Sample B Female 19.1
Sample C Male 16.8
Sample D Male 21.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 15.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 9.0
Samples: 4

Max nTPM: 10.8
Min nTPM: 7.5
Sample A Male 9.8
Sample B Male 10.8
Sample C Female 7.5
Sample D Female 8.0
Septum
nTPM: 15.3
Samples: 4

Max nTPM: 16.6
Min nTPM: 14.3
Sample A Male 14.3
Sample B Male 16.6
Sample C Female 16.0
Sample D Female 14.4
Ventral forebrain
nTPM: 7.9
Samples: 4

Max nTPM: 8.3
Min nTPM: 7.2
Sample A Male 7.2
Sample B Male 8.3
Sample C Female 8.2
Sample D Female 8.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 3.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 3.1
1934 Antisense, RP_Baylor_253992, Mouse strain C57BL/6J (56 days, male) 3.1
1935 Antisense, RP_Baylor_253992, Mouse strain C57BL/6J (56 days, male) 2.5
Pallidum
Expression energy: 2.4
1934 Antisense, RP_Baylor_253992, Mouse strain C57BL/6J (56 days, male) 2.4
1935 Antisense, RP_Baylor_253992, Mouse strain C57BL/6J (56 days, male) 1.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.