MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:103.2 nTPM
HPA:103.2 nTPM
GTEx:82.2 nTPM
FANTOM5:59.5 Scaled Tags Per Million
Pig:32.3 nTPM
Mouse:28.3 nTPM
Allen mouse:2.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 103.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 102.0
2666 Male, age 74, left hemisphere 110.5
2586 Male, age 75, left hemisphere 107.6
2828 Female, age 72, unknown 104.7
1827 Male, age 72, unknown 101.8
1870 Female, age 42, unknown 101.5
2019 Male, age 18, unknown 100.5
2411 Female, age 72, unknown 99.6
1830 Male, age 51, unknown 98.1
1833 Male, age 53, unknown 98.0
2219 Male, age 76, both hemispheres 97.9
Dorsal raphe nucleus
nTPM: 99.7
2298 Female, age 72, unknown 101.7
2047 Male, age 72, unknown 100.6
2750 Male, age 76, both hemispheres 100.1
1828 Male, age 53, unknown 98.9
2016 Female, age 72, unknown 97.2
Inferior colliculus
nTPM: 98.0
2097 Female, age 72, unknown 99.2
2849 Male, age 72, unknown 98.5
1848 Female, age 42, unknown 97.6
1890 Male, age 53, unknown 96.8
Median raphe nucleus
nTPM: 98.7
2220 Male, age 76, midline 98.7
Pedunculopontine tegmental nucleus
nTPM: 98.2
2334 Male, age 80, both hemispheres 100.2
2338 Male, age 61, both hemispheres 97.3
1921 Female, age 85, both hemispheres 96.9
Periaquaductal grey, anterior
nTPM: 103.2
1947 Male, age 18, unknown 105.4
1795 Male, age 51, unknown 103.1
2502 Female, age 75, unknown 101.1
Periaquaductal grey, dorsal
nTPM: 95.8
1840 Male, age 53, unknown 97.4
1831 Male, age 72, unknown 96.2
2464 Female, age 72, unknown 95.4
2850 Male, age 76, both hemispheres 94.2
Periaquaductal grey, lateral
nTPM: 95.8
2053 Male, age 18, unknown 98.0
2272 Male, age 74, both hemispheres 96.3
2140 Male, age 76, both hemispheres 93.1
Pretectal area
nTPM: 99.9
1816 Male, age 51, unknown 104.7
2007 Male, age 72, unknown 104.6
1817 Female, age 42, unknown 102.2
1944 Female, age 72, unknown 101.6
1815 Male, age 53, unknown 101.4
2407 Male, age 75, both hemispheres 100.9
2667 Female, age 75, unknown 98.7
2825 Male, age 18, unknown 98.6
2316 Male, age 76, right hemisphere 97.3
2224 Female, age 72, unknown 95.3
2273 Male, age 74, both hemispheres 94.0
Red nucleus
nTPM: 100.7
2584 Male, age 75, left hemisphere 105.0
2769 Male, age 72, unknown 101.7
1821 Female, age 72, unknown 101.5
1904 Male, age 53, unknown 101.5
2785 Male, age 18, unknown 101.3
1865 Male, age 51, unknown 100.6
2503 Female, age 72, unknown 100.5
2227 Male, age 72, unknown 99.9
1954 Female, age 42, unknown 99.6
2588 Male, age 74, left hemisphere 99.6
2823 Male, age 76, right hemisphere 99.2
2725 Female, age 75, unknown 97.8
Substantia nigra
nTPM: 102.2
1916 Female, age 42, unknown 108.0
1851 Male, age 51, unknown 105.3
2583 Male, age 75, right hemisphere 105.0
2665 Male, age 74, both hemispheres 103.7
1941 Male, age 53, unknown 102.6
1889 Female, age 72, unknown 102.5
2590 Female, age 75, unknown 100.2
2699 Male, age 18, unknown 99.3
2409 Female, age 72, unknown 98.0
2241 Male, age 72, unknown 97.5
Superior colliculus
nTPM: 101.2
2668 Female, age 75, unknown 110.0
2664 Male, age 75, both hemispheres 105.8
1796 Male, age 53, unknown 103.4
1913 Female, age 42, unknown 102.0
2087 Female, age 72, unknown 101.1
2261 Male, age 18, unknown 100.6
1995 Male, age 72, unknown 98.5
1839 Male, age 51, unknown 98.0
1895 Male, age 76, right hemisphere 96.8
2587 Male, age 74, left hemisphere 95.5
Ventral tegmental area
nTPM: 100.0
1915 Female, age 42, unknown 102.8
2410 Female, age 72, unknown 101.3
2223 Female, age 72, unknown 100.1
1942 Male, age 51, unknown 99.1
2021 Male, age 53, unknown 98.5
2218 Male, age 76, both hemispheres 98.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 82.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 82.2
Samples: 139

Max nTPM: 139.1
Min nTPM: 41.7
Std nTPM: 16.7
Median nTPM: 80.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 139.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 132.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 128.9
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 127.7
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 126.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 119.9
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 115.8
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 112.0
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 112.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 111.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 103.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 59.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 59.5
FF:10158-103A5 76 years, female 59.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 32.3
Pig sample Sample description nTPM
Midbrain
nTPM: 31.4
Samples: 4

Max nTPM: 36.7
Min nTPM: 26.7
Sample A Female 36.7
Sample B Female 26.7
Sample C Male 33.4
Sample D Male 28.7
Periaqueductal gray
nTPM: 25.1
Samples: 3

Max nTPM: 28.0
Min nTPM: 22.2
Sample B Female 25.1
Sample C Male 28.0
Sample D Male 22.2
Substantia nigra
nTPM: 29.0
Samples: 4

Max nTPM: 35.2
Min nTPM: 24.1
Sample A Female 35.2
Sample B Female 24.1
Sample C Male 30.2
Sample D Male 26.4
Superior colliculi
nTPM: 32.4
Samples: 4

Max nTPM: 37.5
Min nTPM: 27.2
Sample A Female 37.5
Sample B Female 27.2
Sample C Male 33.4
Sample D Male 31.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 28.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 28.3
Samples: 4

Max nTPM: 30.1
Min nTPM: 27.4
Sample A Male 30.1
Sample B Male 27.4
Sample C Female 28.2
Sample D Female 27.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.6
69080030 Antisense, RP_050324_01_E08, Mouse strain C57BL/6J (56 days, male) 2.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.