BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:71.9 nTPM
HPA:71.9 nTPM
GTEx:68.2 nTPM
FANTOM5:180.8 Scaled Tags Per Million
Pig:31.1 nTPM
Mouse:0.0 nTPM
Allen mouse:2.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 71.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 57.8
2481 Female, age 94, left hemisphere 75.8
1854 Male, age 80, left hemisphere 62.8
1857 Female, age 85, left hemisphere 62.3
2289 Male, age 61, right hemisphere 62.0
2288 Male, age 75, left hemisphere 61.5
2290 Female, age 72, unknown 60.0
2846 Female, age 79, unknown 40.6
1781 Male, age 74, unknown 37.4
Claustrum
nTPM: 27.4
2196 Female, age 79, unknown 31.3
2198 Male, age 80, both hemispheres 29.8
2491 Male, age 75, both hemispheres 29.5
2568 Male, age 61, both hemispheres 28.1
2284 Female, age 91, both hemispheres 26.9
2392 Female, age 94, both hemispheres 26.6
2645 Female, age 72, unknown 26.3
2292 Female, age 85, both hemispheres 24.4
1956 Male, age 74, unknown 23.4
Globus pallidus, externus
nTPM: 71.9
1996 Male, age 80, right hemisphere 99.2
2646 Male, age 61, right hemisphere 96.6
2772 Female, age 79, unknown 62.7
2567 Female, age 72, unknown 51.7
2395 Male, age 75, both hemispheres 49.2
Globus pallidus, internus
nTPM: 66.4
1818 Male, age 74, unknown 84.2
2037 Male, age 80, right hemisphere 84.0
2483 Female, age 94, right hemisphere 76.3
2778 Female, age 91, both hemispheres 66.0
2111 Female, age 85, right hemisphere 55.2
2287 Male, age 75, right hemisphere 54.5
2566 Female, age 72, unknown 44.9
Nucleus accumbens
nTPM: 50.0
2286 Male, age 75, left hemisphere 70.9
1806 Female, age 85, left hemisphere 55.7
2391 Female, age 94, left hemisphere 50.8
2824 Male, age 61, right hemisphere 50.4
2698 Female, age 72, unknown 46.9
2732 Male, age 80, right hemisphere 45.9
1856 Female, age 91, right hemisphere 41.3
1783 Male, age 74, unknown 38.2
Nucleus basalis of Meynert
nTPM: 54.0
2569 Male, age 61, both hemispheres 104.0
2393 Male, age 80, right hemisphere 40.2
2484 Female, age 94, left hemisphere 37.0
2821 Male, age 75, both hemispheres 34.6
Nucleus of the diagonal band
nTPM: 36.1
1979 Male, age 74, unknown 43.2
1812 Female, age 91, both hemispheres 40.9
2195 Female, age 85, both hemispheres 33.9
2029 Male, age 61, right hemisphere 31.5
2775 Male, age 80, right hemisphere 30.9
Olfactory tubercle
nTPM: 36.3
2856 Male, age 75, right hemisphere 47.8
1846 Male, age 80, right hemisphere 42.6
2487 Female, age 94, left hemisphere 29.6
1998 Female, age 91, both hemispheres 25.2
Putamen
nTPM: 41.9
2482 Female, age 94, left hemisphere 60.7
1937 Female, age 91, right hemisphere 43.0
1838 Male, age 80, right hemisphere 40.8
1829 Male, age 74, unknown 38.7
2489 Female, age 72, unknown 38.3
2647 Male, age 75, left hemisphere 38.1
2466 Female, age 79, unknown 33.7
Septal nuclei
nTPM: 41.8
2199 Male, age 80, right hemisphere 59.7
2059 Female, age 85, both hemispheres 54.7
2394 Male, age 61, left hemisphere 44.3
2009 Female, age 91, both hemispheres 36.6
2629 Female, age 94, right hemisphere 33.9
2031 Female, age 72, unknown 32.1
1960 Male, age 74, unknown 31.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 68.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 68.2
Samples: 246

Max nTPM: 195.0
Min nTPM: 13.9
Std nTPM: 26.9
Median nTPM: 66.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 195.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 155.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 148.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 142.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 137.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 133.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 126.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 119.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 118.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 116.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 115.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 51.7
Samples: 246

Max nTPM: 136.0
Min nTPM: 13.0
Std nTPM: 20.3
Median nTPM: 49.6
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 136.0
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 112.1
GTEX-X4XX-0011-R6B-SM-46MWP 60-69 years, male 109.2
GTEX-139TT-0011-R6b-SM-5J2ON 60-69 years, male 101.7
GTEX-1192X-0011-R6a-SM-DNZZB 50-59 years, male 101.1
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 98.9
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 97.8
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 95.3
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 94.1
GTEX-QVUS-0011-R6A-SM-3GACX 60-69 years, female 93.0
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 92.9
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Brain - Putamen (basal ganglia)
Average nTPM: 53.6
Samples: 205

Max nTPM: 106.9
Min nTPM: 9.2
Std nTPM: 21.1
Median nTPM: 52.4
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 106.9
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 105.7
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 104.6
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 101.3
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 99.8
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 99.1
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 98.1
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 95.9
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 94.2
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 92.9
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 89.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 180.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 180.8
FF:10164-103B2 76 years, female 180.8
Globus pallidus
Scaled Tags Per Million: 150.3
FF:10161-103A8 76 years, female 166.5
FF:10175-103C4 60 years, female 134.1
Nucleus accumbens
Scaled Tags Per Million: 102.4
FF:10037-101F1 23-56 years, mixed 102.4
Putamen
Scaled Tags Per Million: 139.6
FF:10176-103C5 60 years, female 139.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 31.1
Pig sample Sample description nTPM
Caudate
nTPM: 22.3
Samples: 4

Max nTPM: 24.2
Min nTPM: 19.0
Sample A Female 19.0
Sample B Female 23.6
Sample C Male 24.2
Sample D Male 22.5
Putamen
nTPM: 31.1
Samples: 4

Max nTPM: 38.1
Min nTPM: 25.3
Sample A Female 38.1
Sample B Female 25.3
Sample C Male 32.6
Sample D Male 28.5
Septum
nTPM: 29.8
Samples: 4

Max nTPM: 37.8
Min nTPM: 24.9
Sample A Female 24.9
Sample B Female 28.5
Sample C Male 27.9
Sample D Male 37.8
Ventral pallidum
nTPM: 29.2
Samples: 4

Max nTPM: 37.0
Min nTPM: 19.9
Sample A Female 19.9
Sample B Female 37.0
Sample C Male 32.4
Sample D Male 27.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 0.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 23.6
Samples: 4

Max nTPM: 24.9
Min nTPM: 22.3
Sample A Male 24.9
Sample B Male 24.6
Sample C Female 22.4
Sample D Female 22.3
Septum
nTPM: 31.2
Samples: 4

Max nTPM: 36.5
Min nTPM: 27.7
Sample A Male 27.7
Sample B Male 28.9
Sample C Female 36.5
Sample D Female 31.7
Ventral forebrain
nTPM: 21.2
Samples: 4

Max nTPM: 23.4
Min nTPM: 18.9
Sample A Male 23.4
Sample B Male 21.1
Sample C Female 21.2
Sample D Female 18.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.8
68798019 Antisense, RP_050215_01_F03, Mouse strain C57BL/6J (56 days, male) 1.8
70919931 Antisense, RP_050713_02_D02, Mouse strain C57BL/6J (56 days, male) 0.1
73617666 Antisense, RP_051130_02_D01, Mouse strain C57BL/6J (56 days, male) 0.0
Striatum
Expression energy: 1.8
68798019 Antisense, RP_050215_01_F03, Mouse strain C57BL/6J (56 days, male) 1.8
70919931 Antisense, RP_050713_02_D02, Mouse strain C57BL/6J (56 days, male) 0.1
73617666 Antisense, RP_051130_02_D01, Mouse strain C57BL/6J (56 days, male) 0.0
Striatum
Expression energy: 1.8
68798019 Antisense, RP_050215_01_F03, Mouse strain C57BL/6J (56 days, male) 1.8
70919931 Antisense, RP_050713_02_D02, Mouse strain C57BL/6J (56 days, male) 0.1
73617666 Antisense, RP_051130_02_D01, Mouse strain C57BL/6J (56 days, male) 0.0
Striatum
Expression energy: 1.8
68798019 Antisense, RP_050215_01_F03, Mouse strain C57BL/6J (56 days, male) 1.8
70919931 Antisense, RP_050713_02_D02, Mouse strain C57BL/6J (56 days, male) 0.1
73617666 Antisense, RP_051130_02_D01, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 2.2
68798019 Antisense, RP_050215_01_F03, Mouse strain C57BL/6J (56 days, male) 2.2
70919931 Antisense, RP_050713_02_D02, Mouse strain C57BL/6J (56 days, male) 0.1
73617666 Antisense, RP_051130_02_D01, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 2.2
68798019 Antisense, RP_050215_01_F03, Mouse strain C57BL/6J (56 days, male) 2.2
70919931 Antisense, RP_050713_02_D02, Mouse strain C57BL/6J (56 days, male) 0.1
73617666 Antisense, RP_051130_02_D01, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 2.2
68798019 Antisense, RP_050215_01_F03, Mouse strain C57BL/6J (56 days, male) 2.2
70919931 Antisense, RP_050713_02_D02, Mouse strain C57BL/6J (56 days, male) 0.1
73617666 Antisense, RP_051130_02_D01, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 2.2
68798019 Antisense, RP_050215_01_F03, Mouse strain C57BL/6J (56 days, male) 2.2
70919931 Antisense, RP_050713_02_D02, Mouse strain C57BL/6J (56 days, male) 0.1
73617666 Antisense, RP_051130_02_D01, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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