HIPPOCAMPAL FORMATION - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:48.4 nTPM
HPA:48.4 nTPM
GTEx:35.5 nTPM
FANTOM5:187.7 Scaled Tags Per Million
Pig:36.1 nTPM
Mouse:0.0 nTPM
Allen mouse:4.0 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 48.4
Sample id Sample description nTPM
Hippocampus
nTPM: 48.4
1855 Male, age 76, left hemisphere 58.8
1911 Female, age 85, right hemisphere 51.9
2529 Female, age 94, left hemisphere 49.3
2148 Female, age 91, left hemisphere 45.6
1898 Male, age 80, left hemisphere 43.7
2621 Female, age 67, right hemisphere 40.8
Dentate gyrus
nTPM: 35.3
2528 Male, age 74, both hemispheres 47.1
2246 Female, age 85, both hemispheres 43.9
2010 Male, age 76, both hemispheres 41.8
1927 Female, age 91, both hemispheres 32.6
2530 Female, age 94, left hemisphere 23.5
2531 Female, age 67, both hemispheres 22.9
Entorhinal gyrus
nTPM: 37.7
2117 Female, age 91, right hemisphere 59.8
1938 Female, age 85, left hemisphere 44.3
2686 Male, age 75, right hemisphere 35.2
1787 Male, age 76, left hemisphere 34.4
2764 Male, age 80, right hemisphere 29.2
2613 Female, age 94, left hemisphere 23.3
Hippocampus, CA1
nTPM: 41.7
2527 Male, age 74, both hemispheres 53.5
1873 Female, age 85, both hemispheres 48.3
2082 Female, age 91, right hemisphere 46.8
2045 Male, age 76, both hemispheres 36.7
2749 Male, age 80, left hemisphere 23.4
Hippocampus, CA2
nTPM: 42.6
2249 Male, age 74, both hemispheres 55.9
1940 Female, age 85, left hemisphere 54.2
2113 Female, age 91, right hemisphere 50.4
1963 Male, age 80, left hemisphere 35.2
2437 Female, age 94, left hemisphere 32.7
1892 Male, age 76, both hemispheres 27.2
Hippocampus, CA3
nTPM: 38.8
2436 Male, age 74, both hemispheres 58.3
1891 Female, age 85, both hemispheres 49.2
1867 Male, age 76, both hemispheres 36.1
2861 Female, age 67, both hemispheres 34.3
2620 Female, age 94, left hemisphere 30.5
2137 Male, age 80, left hemisphere 24.6
Parahippocampal cortex
nTPM: 39.1
2692 Male, age 74, both hemispheres 49.4
2622 Female, age 67, right hemisphere 48.8
1933 Female, age 85, both hemispheres 44.2
2250 Female, age 67, right hemisphere 42.2
2018 Male, age 76, both hemispheres 38.9
2245 Female, age 91, both hemispheres 35.9
1990 Female, age 91, right hemisphere 35.5
1850 Male, age 80, both hemispheres 33.5
2693 Female, age 94, both hemispheres 33.3
2532 Female, age 72, left hemisphere 29.8
Perirhinal gyrus
nTPM: 33.2
1847 Female, age 91, left hemisphere 36.4
1841 Female, age 85, right hemisphere 34.9
1794 Male, age 80, right hemisphere 33.9
2521 Female, age 94, right hemisphere 33.9
2848 Male, age 76, right hemisphere 27.2
Subiculum
nTPM: 44.3
2619 Male, age 74, both hemispheres 56.4
2729 Female, age 91, right hemisphere 55.4
2042 Male, age 76, both hemispheres 43.5
2438 Female, age 94, left hemisphere 38.8
1901 Male, age 80, both hemispheres 38.7
1977 Female, age 85, both hemispheres 33.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 35.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 35.5
Samples: 197

Max nTPM: 89.0
Min nTPM: 9.5
Std nTPM: 16.3
Median nTPM: 32.0
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 89.0
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 84.9
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 82.5
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 82.0
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 77.7
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 77.5
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 75.2
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 73.0
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 71.9
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 68.6
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 65.1
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 187.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 187.7
FF:10153-102I9 76 years, female 236.3
FF:10169-103B7 60 years, female 139.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 36.1
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 31.8
Samples: 4

Max nTPM: 39.2
Min nTPM: 25.9
Sample A Female 39.2
Sample B Female 31.1
Sample C Male 30.8
Sample D Male 25.9
Entorhinal cortex
nTPM: 30.4
Samples: 4

Max nTPM: 41.3
Min nTPM: 23.5
Sample A Female 29.9
Sample B Female 41.3
Sample C Male 26.8
Sample D Male 23.5
Subiculum
nTPM: 36.1
Samples: 4

Max nTPM: 41.0
Min nTPM: 34.2
Sample A Female 41.0
Sample B Female 34.4
Sample C Male 34.2
Sample D Male 34.7
Ventral hippocampus
nTPM: 35.5
Samples: 4

Max nTPM: 43.8
Min nTPM: 31.4
Sample A Female 34.7
Sample B Female 32.0
Sample C Male 43.8
Sample D Male 31.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 0.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 30.0
Samples: 4

Max nTPM: 36.5
Min nTPM: 27.5
Sample A Male 28.3
Sample B Male 27.7
Sample C Female 36.5
Sample D Female 27.5
Hippocampal formation
nTPM: 40.9
Samples: 4

Max nTPM: 44.8
Min nTPM: 38.3
Sample A Male 39.0
Sample B Male 38.3
Sample C Female 41.4
Sample D Female 44.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 4.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.0
68798019 Antisense, RP_050215_01_F03, Mouse strain C57BL/6J (56 days, male) 4.0
70919931 Antisense, RP_050713_02_D02, Mouse strain C57BL/6J (56 days, male) 0.3
73617666 Antisense, RP_051130_02_D01, Mouse strain C57BL/6J (56 days, male) 0.1
Hippocampal formation
Expression energy: 4.0
68798019 Antisense, RP_050215_01_F03, Mouse strain C57BL/6J (56 days, male) 4.0
70919931 Antisense, RP_050713_02_D02, Mouse strain C57BL/6J (56 days, male) 0.3
73617666 Antisense, RP_051130_02_D01, Mouse strain C57BL/6J (56 days, male) 0.1
Hippocampal formation
Expression energy: 4.0
68798019 Antisense, RP_050215_01_F03, Mouse strain C57BL/6J (56 days, male) 4.0
70919931 Antisense, RP_050713_02_D02, Mouse strain C57BL/6J (56 days, male) 0.3
73617666 Antisense, RP_051130_02_D01, Mouse strain C57BL/6J (56 days, male) 0.1
Hippocampal formation
Expression energy: 4.0
68798019 Antisense, RP_050215_01_F03, Mouse strain C57BL/6J (56 days, male) 4.0
70919931 Antisense, RP_050713_02_D02, Mouse strain C57BL/6J (56 days, male) 0.3
73617666 Antisense, RP_051130_02_D01, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.