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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:12.4 nTPM
HPA:12.4 nTPM
GTEx:8.7 nTPM
FANTOM5:14.4 Scaled Tags Per Million
Pig:38.9 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 12.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 8.8
2194 Female, age 79, both hemispheres 11.5
2565 Male, age 75, midline 8.7
2816 Male, age 47, midline 8.0
1981 Female, age 72, midline 7.9
2048 Male, age 55, midline 7.8
Cervical spinal cord, dorsal horn
nTPM: 7.5
2173 Female, age 72, unknown 20.9
2296 Male, age 66, both hemispheres 6.1
2721 Male, age 90, both hemispheres 5.4
2069 Male, age 47, both hemispheres 4.8
1877 Male, age 55, unknown 4.3
2297 Male, age 75, both hemispheres 3.7
Cervical spinal cord, ventral horn
nTPM: 12.4
2820 Female, age 79, both hemispheres 23.6
2068 Male, age 55, unknown 14.3
2098 Female, age 72, unknown 11.6
2809 Male, age 90, both hemispheres 10.9
2480 Male, age 75, both hemispheres 7.6
2295 Male, age 66, both hemispheres 6.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 8.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 8.7
Samples: 159

Max nTPM: 70.2
Min nTPM: 1.3
Std nTPM: 8.9
Median nTPM: 6.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 70.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 59.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 43.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 38.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 35.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 30.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 24.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 21.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 19.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 19.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 19.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 16.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 15.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 15.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 14.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 14.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 14.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 14.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 14.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 13.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 13.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 13.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 12.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 12.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 12.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 11.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 10.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 10.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 10.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 10.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 10.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 10.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 10.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 10.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 9.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 9.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 9.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 9.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 9.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 9.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 9.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 9.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 9.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 9.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 8.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 8.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 8.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 8.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 8.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 8.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 8.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 8.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 8.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 8.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 8.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 8.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 7.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 7.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 7.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 7.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 7.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 7.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 7.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 7.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 7.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 7.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 7.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 7.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 7.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 7.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 7.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 6.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 6.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 6.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 6.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 6.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 6.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 6.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 6.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 6.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 6.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 6.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 6.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 6.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 6.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 6.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 6.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 6.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 6.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 6.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 5.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 5.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 5.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 5.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 5.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 5.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 5.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 5.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 5.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 5.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 5.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 5.1
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 5.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 5.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 5.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 5.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 5.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 5.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 4.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 4.8
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 4.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 4.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 4.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 4.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 4.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 4.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 4.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 4.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 4.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 4.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 4.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 4.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 4.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 4.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 3.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 3.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 3.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 3.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 3.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 3.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 3.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 3.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 3.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 3.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 3.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 3.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 3.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 3.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 3.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 3.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 3.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 3.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 3.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 3.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 3.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 2.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 2.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 2.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 2.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 2.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 2.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 2.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 2.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 2.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 2.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 1.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 1.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 1.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1.3
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 14.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 14.4
FF:10181-103D1 60 years, female 20.0
FF:10159-103A6 76 years, female 8.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 38.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 7.0
Samples: 4

Max nTPM: 10.2
Min nTPM: 4.1
Sample A Female 10.2
Sample B Female 4.8
Sample C Male 4.1
Sample D Male 8.7
Ventral spinal cord
nTPM: 39.0
Samples: 4

Max nTPM: 50.3
Min nTPM: 20.5
Sample A Female 38.2
Sample B Female 46.8
Sample C Male 50.3
Sample D Male 20.5

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