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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:12.6 nTPM
HPA:12.6 nTPM
GTEx:35.8 nTPM
FANTOM5:42.7 Scaled Tags Per Million

AMYGDALA - HPA Brain RNA-seq
Max nTPM 12.6
Sample id Sample description nTPM
Amygdala
nTPM: 11.1
2814 Male, age 76, right hemisphere 11.8
1987 Female, age 91, left hemisphere 11.4
2695 Female, age 67, right hemisphere 11.2
2514 Male, age 75, right hemisphere 10.9
2517 Female, age 94, left hemisphere 10.2
Basal amygdala
nTPM: 10.8
1955 Male, age 76, both hemispheres 11.2
2243 Female, age 91, right hemisphere 11.0
2685 Female, age 94, left hemisphere 11.0
2609 Male, age 75, right hemisphere 10.8
2110 Male, age 80, left hemisphere 10.6
2827 Female, age 67, right hemisphere 10.3
Central amygdala
nTPM: 11.0
2701 Female, age 91, right hemisphere 12.1
2239 Male, age 80, left hemisphere 11.6
1905 Male, age 76, both hemispheres 11.5
2515 Male, age 75, right hemisphere 10.0
2826 Female, age 94, left hemisphere 10.0
Corticomedial amygdala
nTPM: 11.2
2240 Male, age 76, both hemispheres 11.8
2829 Male, age 80, left hemisphere 11.7
2242 Female, age 91, right hemisphere 11.4
2429 Female, age 94, left hemisphere 11.4
2428 Male, age 75, right hemisphere 11.0
2535 Female, age 67, right hemisphere 9.8
Lateral amygdala
nTPM: 10.6
1883 Male, age 76, both hemispheres 11.5
2516 Male, age 75, right hemisphere 11.1
2255 Female, age 91, right hemisphere 10.5
2830 Female, age 67, right hemisphere 10.3
2256 Male, age 80, left hemisphere 10.2
2534 Female, age 94, left hemisphere 10.2
Stria terminalis, bed nucleus
nTPM: 12.6
2201 Male, age 74, unknown 12.8
1974 Female, age 91, both hemispheres 12.6
2486 Female, age 94, both hemispheres 12.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 35.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 35.8
Samples: 152

Max nTPM: 341.4
Min nTPM: 11.0
Std nTPM: 33.5
Median nTPM: 30.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 341.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 271.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 77.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 67.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 63.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 62.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 61.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 60.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 58.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 58.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 57.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 52.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 49.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 48.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 48.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 47.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 46.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 45.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 45.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 45.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 44.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 43.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 43.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 42.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 42.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 41.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 41.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 41.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 41.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 41.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 41.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 40.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 40.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 40.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 40.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 40.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 39.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 38.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 38.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 38.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 38.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 37.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 37.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 37.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 37.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 36.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 36.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 35.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 35.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 35.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 35.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 35.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 35.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 34.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 34.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 33.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 33.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 33.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 33.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 33.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 33.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 32.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 32.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 32.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 32.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 32.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 32.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 31.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 31.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 31.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 31.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 31.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 31.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 31.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 30.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 30.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 30.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 30.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 30.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 30.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 30.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 30.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 29.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 29.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 29.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 29.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 28.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 28.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 28.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 28.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 28.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 28.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 28.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 27.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 27.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 27.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 27.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 27.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 27.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 27.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 27.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 27.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 26.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 26.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 26.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 26.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 26.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 25.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 25.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 25.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 25.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 24.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 24.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 24.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 24.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 23.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 23.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 23.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 23.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 23.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 23.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 23.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 22.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 22.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 22.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 22.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 22.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 21.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 21.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 20.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 20.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 20.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 20.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 20.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 19.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 19.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 19.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 18.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 18.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 18.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 18.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 17.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 17.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 17.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 17.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 16.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 16.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 14.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 13.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 12.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 11.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 11.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 42.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 42.7
FF:10151-102I7 76 years, female 42.7

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