BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:5.1 nTPM
HPA:5.1 nTPM
GTEx:7.3 nTPM
FANTOM5:3.5 Scaled Tags Per Million
Pig:4.0 nTPM
Mouse:0.7 nTPM
Allen mouse:0.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA044154
Glial cells Not detected
Neuronal cells Not detected


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 5.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 3.7
2289 Male, age 61, right hemisphere 4.5
2481 Female, age 94, left hemisphere 4.3
2288 Male, age 75, left hemisphere 4.0
1781 Male, age 74, unknown 3.9
2290 Female, age 72, unknown 3.7
1857 Female, age 85, left hemisphere 3.3
1854 Male, age 80, left hemisphere 3.1
2846 Female, age 79, unknown 2.7
Claustrum
nTPM: 4.1
2491 Male, age 75, both hemispheres 4.9
2292 Female, age 85, both hemispheres 4.8
2568 Male, age 61, both hemispheres 4.4
1956 Male, age 74, unknown 4.2
2645 Female, age 72, unknown 3.9
2198 Male, age 80, both hemispheres 3.8
2284 Female, age 91, both hemispheres 3.6
2392 Female, age 94, both hemispheres 3.6
2196 Female, age 79, unknown 3.4
Globus pallidus, externus
nTPM: 5.0
2567 Female, age 72, unknown 6.7
2646 Male, age 61, right hemisphere 5.7
2772 Female, age 79, unknown 4.8
1996 Male, age 80, right hemisphere 4.7
2395 Male, age 75, both hemispheres 3.3
Globus pallidus, internus
nTPM: 5.1
2111 Female, age 85, right hemisphere 6.4
2566 Female, age 72, unknown 6.2
2778 Female, age 91, both hemispheres 5.3
2037 Male, age 80, right hemisphere 4.7
2287 Male, age 75, right hemisphere 4.6
1818 Male, age 74, unknown 4.5
2483 Female, age 94, right hemisphere 4.2
Nucleus accumbens
nTPM: 3.8
2732 Male, age 80, right hemisphere 4.7
2824 Male, age 61, right hemisphere 4.5
2391 Female, age 94, left hemisphere 4.1
2286 Male, age 75, left hemisphere 4.0
1806 Female, age 85, left hemisphere 3.8
1783 Male, age 74, unknown 3.4
2698 Female, age 72, unknown 3.4
1856 Female, age 91, right hemisphere 2.8
Nucleus basalis of Meynert
nTPM: 4.2
2569 Male, age 61, both hemispheres 6.4
2484 Female, age 94, left hemisphere 4.6
2821 Male, age 75, both hemispheres 3.1
2393 Male, age 80, right hemisphere 2.7
Nucleus of the diagonal band
nTPM: 3.7
2029 Male, age 61, right hemisphere 4.4
1979 Male, age 74, unknown 3.8
2775 Male, age 80, right hemisphere 3.8
1812 Female, age 91, both hemispheres 3.3
2195 Female, age 85, both hemispheres 3.3
Olfactory tubercle
nTPM: 3.9
2487 Female, age 94, left hemisphere 4.4
2856 Male, age 75, right hemisphere 4.2
1846 Male, age 80, right hemisphere 3.6
1998 Female, age 91, both hemispheres 3.4
Putamen
nTPM: 3.3
1829 Male, age 74, unknown 3.7
2647 Male, age 75, left hemisphere 3.7
2482 Female, age 94, left hemisphere 3.6
2489 Female, age 72, unknown 3.6
1937 Female, age 91, right hemisphere 3.3
2466 Female, age 79, unknown 3.0
1838 Male, age 80, right hemisphere 2.2
Septal nuclei
nTPM: 4.1
2059 Female, age 85, both hemispheres 5.2
2394 Male, age 61, left hemisphere 5.1
2199 Male, age 80, right hemisphere 5.0
2629 Female, age 94, right hemisphere 3.5
2031 Female, age 72, unknown 3.3
1960 Male, age 74, unknown 3.2
2009 Female, age 91, both hemispheres 3.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 7.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 5.9
Samples: 246

Max nTPM: 15.1
Min nTPM: 1.2
Std nTPM: 2.5
Median nTPM: 5.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 15.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 14.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 13.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 12.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 12.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 12.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 12.1
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 11.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 11.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 11.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 11.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 6.0
Samples: 246

Max nTPM: 20.1
Min nTPM: 0.8
Std nTPM: 3.3
Median nTPM: 5.2
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 20.1
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 19.0
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 18.3
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 18.3
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 17.0
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 15.3
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 15.1
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 14.5
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 14.0
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 13.8
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 13.6
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Brain - Putamen (basal ganglia)
Average nTPM: 7.3
Samples: 205

Max nTPM: 29.0
Min nTPM: 2.4
Std nTPM: 3.2
Median nTPM: 6.7
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 29.0
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 18.3
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 16.2
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 15.9
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 15.9
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 14.9
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 14.0
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 13.5
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 13.4
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 12.9
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 12.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 3.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 2.1
FF:10164-103B2 76 years, female 2.1
Globus pallidus
Scaled Tags Per Million: 2.9
FF:10161-103A8 76 years, female 3.4
FF:10175-103C4 60 years, female 2.3
Nucleus accumbens
Scaled Tags Per Million: 2.1
FF:10037-101F1 23-56 years, mixed 2.1
Putamen
Scaled Tags Per Million: 3.5
FF:10176-103C5 60 years, female 3.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 4.0
Pig sample Sample description nTPM
Caudate
nTPM: 4.0
Samples: 4

Max nTPM: 4.4
Min nTPM: 3.6
Sample A Female 3.6
Sample B Female 4.4
Sample C Male 4.4
Sample D Male 3.6
Putamen
nTPM: 3.7
Samples: 4

Max nTPM: 4.5
Min nTPM: 3.0
Sample A Female 4.0
Sample B Female 3.0
Sample C Male 3.3
Sample D Male 4.5
Septum
nTPM: 3.9
Samples: 4

Max nTPM: 4.0
Min nTPM: 3.7
Sample A Female 3.7
Sample B Female 3.9
Sample C Male 4.0
Sample D Male 3.9
Ventral pallidum
nTPM: 4.0
Samples: 4

Max nTPM: 4.5
Min nTPM: 3.4
Sample A Female 3.5
Sample B Female 3.4
Sample C Male 4.5
Sample D Male 4.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 0.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.5
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.2
Sample A Male 0.2
Sample B Male 0.8
Sample C Female 0.2
Sample D Female 0.6
Septum
nTPM: 0.7
Samples: 4

Max nTPM: 1.0
Min nTPM: 0.4
Sample A Male 0.6
Sample B Male 1.0
Sample C Female 0.4
Sample D Female 0.9
Ventral forebrain
nTPM: 0.2
Samples: 4

Max nTPM: 0.4
Min nTPM: 0.0
Sample A Male 0.2
Sample B Male 0.4
Sample C Female 0.0
Sample D Female 0.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
73584729 Antisense, RP_051206_01_A02, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
73584729 Antisense, RP_051206_01_A02, Mouse strain C57BL/6J (56 days, male) 0.0

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