BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:73.5 nTPM
HPA:73.5 nTPM
GTEx:116.6 nTPM
FANTOM5:217.7 Scaled Tags Per Million
Pig:40.8 nTPM
Mouse:45.5 nTPM
Allen mouse:1.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 73.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 27.3
1857 Female, age 85, left hemisphere 56.6
1854 Male, age 80, left hemisphere 51.5
1781 Male, age 74, unknown 34.8
2289 Male, age 61, right hemisphere 24.9
2290 Female, age 72, unknown 23.0
2846 Female, age 79, unknown 16.7
2288 Male, age 75, left hemisphere 10.8
2481 Female, age 94, left hemisphere 0.0
Claustrum
nTPM: 63.4
2198 Male, age 80, both hemispheres 86.6
2491 Male, age 75, both hemispheres 82.5
2568 Male, age 61, both hemispheres 75.6
2196 Female, age 79, unknown 69.0
2284 Female, age 91, both hemispheres 68.9
2392 Female, age 94, both hemispheres 53.1
2645 Female, age 72, unknown 52.0
1956 Male, age 74, unknown 42.2
2292 Female, age 85, both hemispheres 40.5
Globus pallidus, externus
nTPM: 0.0
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.0
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 71.8
1856 Female, age 91, right hemisphere 179.2
1783 Male, age 74, unknown 109.3
2824 Male, age 61, right hemisphere 96.0
1806 Female, age 85, left hemisphere 90.3
2698 Female, age 72, unknown 50.2
2732 Male, age 80, right hemisphere 28.4
2286 Male, age 75, left hemisphere 21.1
2391 Female, age 94, left hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 10.5
2393 Male, age 80, right hemisphere 16.5
2484 Female, age 94, left hemisphere 13.5
2821 Male, age 75, both hemispheres 12.0
2569 Male, age 61, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 65.6
2195 Female, age 85, both hemispheres 90.0
2775 Male, age 80, right hemisphere 80.8
1812 Female, age 91, both hemispheres 69.9
2029 Male, age 61, right hemisphere 55.9
1979 Male, age 74, unknown 31.6
Olfactory tubercle
nTPM: 73.5
2487 Female, age 94, left hemisphere 92.0
1998 Female, age 91, both hemispheres 71.3
2856 Male, age 75, right hemisphere 68.9
1846 Male, age 80, right hemisphere 61.8
Putamen
nTPM: 23.3
1937 Female, age 91, right hemisphere 82.8
1838 Male, age 80, right hemisphere 70.4
1829 Male, age 74, unknown 5.0
2466 Female, age 79, unknown 2.7
2482 Female, age 94, left hemisphere 2.3
2489 Female, age 72, unknown 0.0
2647 Male, age 75, left hemisphere 0.0
Septal nuclei
nTPM: 49.3
1960 Male, age 74, unknown 119.0
2059 Female, age 85, both hemispheres 61.8
2629 Female, age 94, right hemisphere 61.4
2031 Female, age 72, unknown 52.8
2009 Female, age 91, both hemispheres 49.6
2394 Male, age 61, left hemisphere 0.5
2199 Male, age 80, right hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 116.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 36.3
Samples: 246

Max nTPM: 193.9
Min nTPM: 1.5
Std nTPM: 27.1
Median nTPM: 31.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 193.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 142.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 124.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 120.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 118.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 116.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 115.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 97.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 94.0
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 93.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 90.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 116.6
Samples: 246

Max nTPM: 306.3
Min nTPM: 3.0
Std nTPM: 64.6
Median nTPM: 126.8
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 306.3
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 264.3
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 238.7
GTEX-1JMLX-0011-R6b-SM-EXUT9 50-59 years, male 236.1
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 233.5
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 229.7
GTEX-1B933-0011-R6b-SM-79OOQ 50-59 years, female 220.9
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 220.0
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 218.8
GTEX-13RTJ-0011-R6a-SM-5SI74 60-69 years, male 218.7
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 218.0
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Brain - Putamen (basal ganglia)
Average nTPM: 27.4
Samples: 205

Max nTPM: 144.5
Min nTPM: 0.8
Std nTPM: 26.9
Median nTPM: 18.3
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 144.5
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 136.6
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 127.5
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 119.1
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 118.1
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 107.5
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 103.6
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 90.9
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 82.9
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 80.7
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 80.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 217.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 201.8
FF:10164-103B2 76 years, female 201.8
Globus pallidus
Scaled Tags Per Million: 14.0
FF:10175-103C4 60 years, female 22.1
FF:10161-103A8 76 years, female 5.9
Nucleus accumbens
Scaled Tags Per Million: 115.5
FF:10037-101F1 23-56 years, mixed 115.5
Putamen
Scaled Tags Per Million: 217.7
FF:10176-103C5 60 years, female 217.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 40.8
Pig sample Sample description nTPM
Caudate
nTPM: 40.8
Samples: 4

Max nTPM: 46.7
Min nTPM: 34.9
Sample A Female 39.6
Sample B Female 42.0
Sample C Male 46.7
Sample D Male 34.9
Putamen
nTPM: 29.7
Samples: 4

Max nTPM: 34.1
Min nTPM: 17.8
Sample A Female 17.8
Sample B Female 33.6
Sample C Male 34.1
Sample D Male 33.2
Septum
nTPM: 33.5
Samples: 4

Max nTPM: 58.1
Min nTPM: 10.2
Sample A Female 58.1
Sample B Female 51.5
Sample C Male 10.2
Sample D Male 14.2
Ventral pallidum
nTPM: 39.9
Samples: 4

Max nTPM: 58.2
Min nTPM: 19.6
Sample A Female 58.2
Sample B Female 40.0
Sample C Male 19.6
Sample D Male 41.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 45.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 34.7
Samples: 4

Max nTPM: 39.6
Min nTPM: 29.5
Sample A Male 29.5
Sample B Male 32.3
Sample C Female 37.2
Sample D Female 39.6
Septum
nTPM: 45.5
Samples: 4

Max nTPM: 52.3
Min nTPM: 38.6
Sample A Male 52.3
Sample B Male 48.8
Sample C Female 42.3
Sample D Female 38.6
Ventral forebrain
nTPM: 40.5
Samples: 4

Max nTPM: 44.6
Min nTPM: 35.9
Sample A Male 42.7
Sample B Male 35.9
Sample C Female 38.8
Sample D Female 44.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.2
68845239 Antisense, RP_050224_01_D05, Mouse strain C57BL/6J (56 days, male) 1.4
72077453 Antisense, RP_051017_03_A07, Mouse strain C57BL/6J (56 days, male) 1.0
Pallidum
Expression energy: 0.5
72077453 Antisense, RP_051017_03_A07, Mouse strain C57BL/6J (56 days, male) 0.6
68845239 Antisense, RP_050224_01_D05, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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