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GNG2
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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Mouse brain, Intensity
Amygdalai

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
129.682
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:38.5 nTPM
HPA:38.5 nTPM
GTEx:76.6 nTPM
FANTOM5:204.6 Scaled Tags Per Million
Pig:125.7 nTPM
Mouse:149.1 nTPM
Allen mouse:1.5 Expression energy

AMYGDALA - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

Read more
, antibody HPA003534
Amygdala mean intensity 129.682
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
FRONT BACK
Nucleus of the lateral olfactory tract 93.133
Basal medial amygdaloid nucleus 101.554
Basal lateral amygdala* -
Basal lateral amygdaloid nucleus 75.737
Cortical amygdala 129.682
Central amygdala 107.502
Medial amygdaloid nucleus 93.852

AMYGDALA - HPA Brain RNA-seq
Max nTPM 38.5
Sample id Sample description nTPM
Amygdala
nTPM: 13.7
1987 Female, age 91, left hemisphere 25.9
2517 Female, age 94, left hemisphere 19.3
2814 Male, age 76, right hemisphere 15.9
2514 Male, age 75, right hemisphere 7.2
2695 Female, age 67, right hemisphere 0.0
Basal amygdala
nTPM: 28.4
2243 Female, age 91, right hemisphere 56.3
2110 Male, age 80, left hemisphere 53.0
2685 Female, age 94, left hemisphere 25.5
1955 Male, age 76, both hemispheres 24.0
2827 Female, age 67, right hemisphere 8.1
2609 Male, age 75, right hemisphere 3.8
Central amygdala
nTPM: 14.6
2239 Male, age 80, left hemisphere 42.1
2701 Female, age 91, right hemisphere 14.3
1905 Male, age 76, both hemispheres 10.1
2515 Male, age 75, right hemisphere 4.2
2826 Female, age 94, left hemisphere 2.5
Corticomedial amygdala
nTPM: 38.5
2242 Female, age 91, right hemisphere 68.0
2829 Male, age 80, left hemisphere 53.0
2240 Male, age 76, both hemispheres 41.3
2429 Female, age 94, left hemisphere 37.3
2535 Female, age 67, right hemisphere 25.1
2428 Male, age 75, right hemisphere 6.1
Lateral amygdala
nTPM: 11.7
1883 Male, age 76, both hemispheres 24.8
2255 Female, age 91, right hemisphere 16.8
2534 Female, age 94, left hemisphere 14.6
2256 Male, age 80, left hemisphere 9.7
2830 Female, age 67, right hemisphere 2.4
2516 Male, age 75, right hemisphere 1.6
Stria terminalis, bed nucleus
nTPM: 34.1
1974 Female, age 91, both hemispheres 43.9
2486 Female, age 94, both hemispheres 33.1
2201 Male, age 74, unknown 25.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 76.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 76.6
Samples: 152

Max nTPM: 230.0
Min nTPM: 6.5
Std nTPM: 45.9
Median nTPM: 67.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 230.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 213.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 204.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 197.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 188.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 184.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 183.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 183.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 179.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 176.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 171.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 169.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 159.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 156.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 151.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 144.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 138.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 128.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 122.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 118.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 117.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 117.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 114.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 114.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 113.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 111.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 111.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 110.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 109.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 103.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 103.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 103.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 102.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 101.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 100.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 99.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 99.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 98.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 95.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 95.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 95.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 95.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 94.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 91.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 90.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 90.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 89.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 88.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 88.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 86.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 84.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 83.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 82.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 81.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 80.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 80.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 78.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 77.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 77.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 77.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 76.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 76.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 75.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 75.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 75.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 74.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 73.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 73.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 69.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 69.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 69.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 69.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 69.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 68.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 68.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 67.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 67.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 66.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 66.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 66.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 66.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 66.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 65.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 64.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 64.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 62.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 61.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 61.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 60.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 60.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 59.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 59.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 58.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 58.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 58.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 57.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 54.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 54.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 53.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 52.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 51.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 51.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 50.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 50.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 50.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 49.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 49.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 48.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 48.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 48.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 47.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 47.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 46.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 45.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 45.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 43.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 42.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 42.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 42.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 42.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 42.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 41.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 41.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 39.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 39.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 37.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 35.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 34.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 32.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 31.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 30.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 29.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 28.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 28.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 28.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 27.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 26.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 26.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 26.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 24.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 24.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 22.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 21.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 20.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 20.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 18.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 14.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 11.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 10.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 9.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 6.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 6.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 204.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 204.6
FF:10151-102I7 76 years, female 204.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 125.7
Pig sample Sample description nTPM
Amygdala
nTPM: 125.7
Samples: 4

Max nTPM: 181.3
Min nTPM: 101.1
Sample A Female 181.3
Sample B Female 101.1
Sample C Male 118.6
Sample D Male 101.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 149.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 149.1
Samples: 4

Max nTPM: 170.1
Min nTPM: 136.1
Sample A Male 170.1
Sample B Male 146.4
Sample C Female 136.1
Sample D Female 143.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.5
76098396 Antisense, RP_060626_01_G09, Mouse strain C57BL/6J (56 days, male) 2.6
77414160 Antisense, RP_070205_01_F05, Mouse strain C57BL/6J (56 days, male) 1.0
67936006 Antisense, RP_040604_01_F06, Mouse strain C57BL/6J (56 days, male) 1.0

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