BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:48.6 nTPM
HPA:48.6 nTPM
GTEx:29.6 nTPM
FANTOM5:114.8 Scaled Tags Per Million
Pig:13.9 nTPM
Mouse:8.5 nTPM
Allen mouse:5.5 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA070383Antibody CAB020703
Glial cells Not detectedLow
Neuronal cells LowMedium





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 48.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 31.6
2289 Male, age 61, right hemisphere 34.8
2288 Male, age 75, left hemisphere 32.3
2481 Female, age 94, left hemisphere 31.8
1781 Male, age 74, unknown 31.6
1854 Male, age 80, left hemisphere 31.3
2846 Female, age 79, unknown 30.7
2290 Female, age 72, unknown 30.4
1857 Female, age 85, left hemisphere 29.9
Claustrum
nTPM: 37.1
2292 Female, age 85, both hemispheres 51.7
2198 Male, age 80, both hemispheres 37.4
2645 Female, age 72, unknown 36.9
1956 Male, age 74, unknown 36.2
2284 Female, age 91, both hemispheres 35.7
2196 Female, age 79, unknown 34.6
2392 Female, age 94, both hemispheres 34.5
2491 Male, age 75, both hemispheres 34.1
2568 Male, age 61, both hemispheres 33.1
Globus pallidus, externus
nTPM: 48.6
2567 Female, age 72, unknown 63.7
2646 Male, age 61, right hemisphere 50.4
2395 Male, age 75, both hemispheres 43.9
1996 Male, age 80, right hemisphere 42.8
2772 Female, age 79, unknown 42.1
Globus pallidus, internus
nTPM: 44.6
2566 Female, age 72, unknown 54.6
2111 Female, age 85, right hemisphere 54.2
1818 Male, age 74, unknown 45.5
2037 Male, age 80, right hemisphere 43.4
2778 Female, age 91, both hemispheres 42.8
2483 Female, age 94, right hemisphere 37.7
2287 Male, age 75, right hemisphere 33.7
Nucleus accumbens
nTPM: 32.9
2732 Male, age 80, right hemisphere 40.8
2391 Female, age 94, left hemisphere 38.8
2698 Female, age 72, unknown 33.0
1806 Female, age 85, left hemisphere 31.6
2286 Male, age 75, left hemisphere 31.4
1783 Male, age 74, unknown 31.0
2824 Male, age 61, right hemisphere 29.7
1856 Female, age 91, right hemisphere 26.9
Nucleus basalis of Meynert
nTPM: 38.3
2569 Male, age 61, both hemispheres 46.3
2484 Female, age 94, left hemisphere 37.3
2821 Male, age 75, both hemispheres 37.2
2393 Male, age 80, right hemisphere 32.3
Nucleus of the diagonal band
nTPM: 33.0
2195 Female, age 85, both hemispheres 34.5
1979 Male, age 74, unknown 33.7
2029 Male, age 61, right hemisphere 32.9
2775 Male, age 80, right hemisphere 32.7
1812 Female, age 91, both hemispheres 31.2
Olfactory tubercle
nTPM: 33.8
2487 Female, age 94, left hemisphere 36.2
1998 Female, age 91, both hemispheres 35.7
2856 Male, age 75, right hemisphere 31.9
1846 Male, age 80, right hemisphere 31.2
Putamen
nTPM: 34.2
2647 Male, age 75, left hemisphere 40.8
2489 Female, age 72, unknown 40.6
1829 Male, age 74, unknown 34.5
2482 Female, age 94, left hemisphere 33.8
2466 Female, age 79, unknown 31.3
1937 Female, age 91, right hemisphere 30.9
1838 Male, age 80, right hemisphere 27.2
Septal nuclei
nTPM: 36.2
2059 Female, age 85, both hemispheres 41.9
2394 Male, age 61, left hemisphere 41.4
2199 Male, age 80, right hemisphere 39.9
1960 Male, age 74, unknown 36.4
2009 Female, age 91, both hemispheres 34.0
2031 Female, age 72, unknown 31.0
2629 Female, age 94, right hemisphere 28.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 29.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 26.7
Samples: 246

Max nTPM: 46.9
Min nTPM: 7.0
Std nTPM: 7.9
Median nTPM: 26.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 46.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 46.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 45.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 45.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 45.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 44.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 43.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 43.0
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 42.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 42.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 42.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 22.6
Samples: 246

Max nTPM: 43.8
Min nTPM: 8.1
Std nTPM: 7.0
Median nTPM: 21.6
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 43.8
GTEX-13OVH-0011-R6b-SM-5LUAX 70-79 years, male 43.1
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 43.0
GTEX-WL46-0011-R6A-SM-3LK6X 50-59 years, male 40.3
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 40.2
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 38.5
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 38.2
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 37.5
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 37.2
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 36.7
GTEX-183WM-0011-R6b-SM-72D66 70-79 years, female 36.5
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Brain - Putamen (basal ganglia)
Average nTPM: 29.6
Samples: 205

Max nTPM: 50.6
Min nTPM: 11.8
Std nTPM: 7.4
Median nTPM: 29.3
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 50.6
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 49.1
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 45.2
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 45.0
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 44.3
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 44.1
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 43.5
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 42.8
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 42.7
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 42.5
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 42.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 114.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 80.9
FF:10164-103B2 76 years, female 80.9
Globus pallidus
Scaled Tags Per Million: 114.8
FF:10161-103A8 76 years, female 142.9
FF:10175-103C4 60 years, female 86.8
Nucleus accumbens
Scaled Tags Per Million: 70.9
FF:10037-101F1 23-56 years, mixed 70.9
Putamen
Scaled Tags Per Million: 59.4
FF:10176-103C5 60 years, female 59.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 13.9
Pig sample Sample description nTPM
Caudate
nTPM: 11.0
Samples: 4

Max nTPM: 11.8
Min nTPM: 10.1
Sample A Female 10.3
Sample B Female 11.8
Sample C Male 11.6
Sample D Male 10.1
Putamen
nTPM: 12.8
Samples: 4

Max nTPM: 19.0
Min nTPM: 10.0
Sample A Female 19.0
Sample B Female 10.0
Sample C Male 10.0
Sample D Male 12.2
Septum
nTPM: 13.9
Samples: 4

Max nTPM: 16.6
Min nTPM: 11.9
Sample A Female 13.8
Sample B Female 11.9
Sample C Male 16.6
Sample D Male 13.2
Ventral pallidum
nTPM: 13.2
Samples: 4

Max nTPM: 16.5
Min nTPM: 10.0
Sample A Female 10.0
Sample B Female 13.0
Sample C Male 16.5
Sample D Male 13.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 8.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 8.5
Samples: 4

Max nTPM: 10.9
Min nTPM: 6.6
Sample A Male 6.6
Sample B Male 10.9
Sample C Female 9.0
Sample D Female 7.6
Septum
nTPM: 7.7
Samples: 4

Max nTPM: 8.4
Min nTPM: 6.9
Sample A Male 6.9
Sample B Male 7.7
Sample C Female 7.6
Sample D Female 8.4
Ventral forebrain
nTPM: 7.5
Samples: 4

Max nTPM: 9.1
Min nTPM: 6.3
Sample A Male 6.5
Sample B Male 9.1
Sample C Female 8.0
Sample D Female 6.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 5.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 5.5
75692945 Antisense, RP_060208_02_B07, Mouse strain C57BL/6J (56 days, male) 10.9
71579879 Antisense, RP_050915_04_B10, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 5.1
75692945 Antisense, RP_060208_02_B07, Mouse strain C57BL/6J (56 days, male) 10.2
71579879 Antisense, RP_050915_04_B10, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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