BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:6.5 nTPM
HPA:6.5 nTPM
GTEx:7.1 nTPM
FANTOM5:59.4 Scaled Tags Per Million
Pig:52.8 nTPM
Mouse:5.5 nTPM

CAUDATE - Antibody stainingi
Antibody HPA050053
Glial cells Medium
Neuronal cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 6.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 4.6
2288 Male, age 75, left hemisphere 6.4
2290 Female, age 72, unknown 5.4
2846 Female, age 79, unknown 5.3
2289 Male, age 61, right hemisphere 4.1
2481 Female, age 94, left hemisphere 4.1
1857 Female, age 85, left hemisphere 4.0
1854 Male, age 80, left hemisphere 3.9
1781 Male, age 74, unknown 3.8
Claustrum
nTPM: 5.4
2392 Female, age 94, both hemispheres 7.1
1956 Male, age 74, unknown 6.4
2284 Female, age 91, both hemispheres 6.0
2491 Male, age 75, both hemispheres 5.4
2198 Male, age 80, both hemispheres 5.1
2568 Male, age 61, both hemispheres 5.1
2292 Female, age 85, both hemispheres 4.9
2196 Female, age 79, unknown 4.8
2645 Female, age 72, unknown 3.7
Globus pallidus, externus
nTPM: 5.3
2395 Male, age 75, both hemispheres 6.5
2772 Female, age 79, unknown 6.0
1996 Male, age 80, right hemisphere 5.6
2567 Female, age 72, unknown 4.5
2646 Male, age 61, right hemisphere 3.8
Globus pallidus, internus
nTPM: 6.5
2287 Male, age 75, right hemisphere 8.6
2778 Female, age 91, both hemispheres 7.9
1818 Male, age 74, unknown 6.7
2111 Female, age 85, right hemisphere 6.4
2037 Male, age 80, right hemisphere 5.9
2483 Female, age 94, right hemisphere 5.0
2566 Female, age 72, unknown 4.7
Nucleus accumbens
nTPM: 5.0
2391 Female, age 94, left hemisphere 6.6
2286 Male, age 75, left hemisphere 6.0
2824 Male, age 61, right hemisphere 5.2
1806 Female, age 85, left hemisphere 4.7
1783 Male, age 74, unknown 4.6
2698 Female, age 72, unknown 4.4
1856 Female, age 91, right hemisphere 4.2
2732 Male, age 80, right hemisphere 4.2
Nucleus basalis of Meynert
nTPM: 4.5
2393 Male, age 80, right hemisphere 5.4
2484 Female, age 94, left hemisphere 4.4
2821 Male, age 75, both hemispheres 4.3
2569 Male, age 61, both hemispheres 4.1
Nucleus of the diagonal band
nTPM: 5.6
2029 Male, age 61, right hemisphere 6.3
2195 Female, age 85, both hemispheres 6.1
2775 Male, age 80, right hemisphere 5.8
1812 Female, age 91, both hemispheres 5.7
1979 Male, age 74, unknown 4.2
Olfactory tubercle
nTPM: 5.7
1998 Female, age 91, both hemispheres 6.3
1846 Male, age 80, right hemisphere 5.8
2856 Male, age 75, right hemisphere 5.6
2487 Female, age 94, left hemisphere 5.2
Putamen
nTPM: 4.9
1829 Male, age 74, unknown 6.3
1937 Female, age 91, right hemisphere 5.7
2466 Female, age 79, unknown 5.2
2647 Male, age 75, left hemisphere 4.9
1838 Male, age 80, right hemisphere 4.5
2482 Female, age 94, left hemisphere 4.4
2489 Female, age 72, unknown 3.6
Septal nuclei
nTPM: 4.7
2031 Female, age 72, unknown 6.1
2629 Female, age 94, right hemisphere 5.7
2394 Male, age 61, left hemisphere 5.0
2009 Female, age 91, both hemispheres 4.9
1960 Male, age 74, unknown 4.6
2199 Male, age 80, right hemisphere 3.4
2059 Female, age 85, both hemispheres 3.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 7.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 7.1
Samples: 246

Max nTPM: 16.1
Min nTPM: 4.1
Std nTPM: 1.5
Median nTPM: 6.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 16.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 13.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 12.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 11.1
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 10.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 10.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 10.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 10.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 10.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 10.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 10.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 6.9
Samples: 246

Max nTPM: 15.0
Min nTPM: 3.9
Std nTPM: 1.4
Median nTPM: 6.8
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 15.0
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 10.9
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 10.7
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 10.3
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 10.1
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 9.8
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 9.8
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 9.8
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 9.7
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 9.5
GTEX-R55E-0011-R6A-SM-2TC5T 20-29 years, male 9.5
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Brain - Putamen (basal ganglia)
Average nTPM: 7.0
Samples: 205

Max nTPM: 12.4
Min nTPM: 4.2
Std nTPM: 1.3
Median nTPM: 6.9
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 12.4
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 11.4
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 11.1
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 10.8
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 10.8
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 10.4
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 10.3
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 10.3
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 9.6
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 9.5
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 9.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 59.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 43.7
FF:10164-103B2 76 years, female 43.7
Globus pallidus
Scaled Tags Per Million: 53.5
FF:10175-103C4 60 years, female 57.6
FF:10161-103A8 76 years, female 49.5
Nucleus accumbens
Scaled Tags Per Million: 52.0
FF:10037-101F1 23-56 years, mixed 52.0
Putamen
Scaled Tags Per Million: 59.4
FF:10176-103C5 60 years, female 59.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 52.8
Pig sample Sample description nTPM
Caudate
nTPM: 39.0
Samples: 4

Max nTPM: 42.7
Min nTPM: 34.5
Sample A Female 40.0
Sample B Female 34.5
Sample C Male 42.7
Sample D Male 38.6
Putamen
nTPM: 52.8
Samples: 4

Max nTPM: 71.3
Min nTPM: 46.0
Sample A Female 46.0
Sample B Female 46.0
Sample C Male 71.3
Sample D Male 47.9
Septum
nTPM: 33.8
Samples: 4

Max nTPM: 36.6
Min nTPM: 30.8
Sample A Female 36.6
Sample B Female 36.5
Sample C Male 31.2
Sample D Male 30.8
Ventral pallidum
nTPM: 40.2
Samples: 4

Max nTPM: 42.2
Min nTPM: 38.3
Sample A Female 38.3
Sample B Female 40.7
Sample C Male 39.7
Sample D Male 42.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 5.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 5.5
Samples: 4

Max nTPM: 6.1
Min nTPM: 4.9
Sample A Male 5.1
Sample B Male 4.9
Sample C Female 6.1
Sample D Female 6.0
Septum
nTPM: 4.5
Samples: 4

Max nTPM: 4.7
Min nTPM: 4.1
Sample A Male 4.7
Sample B Male 4.1
Sample C Female 4.5
Sample D Female 4.5
Ventral forebrain
nTPM: 5.0
Samples: 4

Max nTPM: 5.6
Min nTPM: 4.4
Sample A Male 5.6
Sample B Male 4.7
Sample C Female 4.4
Sample D Female 5.1

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