BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:13.4 nTPM
HPA:13.4 nTPM
GTEx:14.0 nTPM
FANTOM5:22.1 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA000162
Glial cells Medium
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 13.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 11.5
2481 Female, age 94, left hemisphere 13.7
2846 Female, age 79, unknown 12.0
1854 Male, age 80, left hemisphere 11.9
2290 Female, age 72, unknown 11.5
1857 Female, age 85, left hemisphere 11.2
1781 Male, age 74, unknown 11.1
2289 Male, age 61, right hemisphere 10.2
2288 Male, age 75, left hemisphere 10.1
Claustrum
nTPM: 12.4
2491 Male, age 75, both hemispheres 13.9
2392 Female, age 94, both hemispheres 13.7
2645 Female, age 72, unknown 12.5
2284 Female, age 91, both hemispheres 12.3
2198 Male, age 80, both hemispheres 12.1
2292 Female, age 85, both hemispheres 12.1
1956 Male, age 74, unknown 11.9
2196 Female, age 79, unknown 11.9
2568 Male, age 61, both hemispheres 11.4
Globus pallidus, externus
nTPM: 11.3
2567 Female, age 72, unknown 12.5
2646 Male, age 61, right hemisphere 11.6
1996 Male, age 80, right hemisphere 11.3
2772 Female, age 79, unknown 11.3
2395 Male, age 75, both hemispheres 9.8
Globus pallidus, internus
nTPM: 11.7
2111 Female, age 85, right hemisphere 12.5
2566 Female, age 72, unknown 12.3
2778 Female, age 91, both hemispheres 12.2
2037 Male, age 80, right hemisphere 11.6
2483 Female, age 94, right hemisphere 11.2
2287 Male, age 75, right hemisphere 11.1
1818 Male, age 74, unknown 10.8
Nucleus accumbens
nTPM: 12.0
2824 Male, age 61, right hemisphere 13.2
1856 Female, age 91, right hemisphere 13.1
2391 Female, age 94, left hemisphere 12.3
1806 Female, age 85, left hemisphere 12.2
1783 Male, age 74, unknown 11.6
2286 Male, age 75, left hemisphere 11.6
2732 Male, age 80, right hemisphere 11.5
2698 Female, age 72, unknown 10.8
Nucleus basalis of Meynert
nTPM: 12.2
2484 Female, age 94, left hemisphere 12.7
2393 Male, age 80, right hemisphere 12.1
2569 Male, age 61, both hemispheres 12.1
2821 Male, age 75, both hemispheres 12.1
Nucleus of the diagonal band
nTPM: 13.2
2029 Male, age 61, right hemisphere 14.1
2195 Female, age 85, both hemispheres 13.3
2775 Male, age 80, right hemisphere 13.1
1979 Male, age 74, unknown 13.0
1812 Female, age 91, both hemispheres 12.7
Olfactory tubercle
nTPM: 13.4
1998 Female, age 91, both hemispheres 14.6
2487 Female, age 94, left hemisphere 14.1
2856 Male, age 75, right hemisphere 12.7
1846 Male, age 80, right hemisphere 12.3
Putamen
nTPM: 12.3
1838 Male, age 80, right hemisphere 13.4
2647 Male, age 75, left hemisphere 13.0
1937 Female, age 91, right hemisphere 12.9
2482 Female, age 94, left hemisphere 11.8
1829 Male, age 74, unknown 11.7
2489 Female, age 72, unknown 11.7
2466 Female, age 79, unknown 11.3
Septal nuclei
nTPM: 12.8
1960 Male, age 74, unknown 14.3
2009 Female, age 91, both hemispheres 13.3
2031 Female, age 72, unknown 13.2
2059 Female, age 85, both hemispheres 12.7
2394 Male, age 61, left hemisphere 12.2
2629 Female, age 94, right hemisphere 12.1
2199 Male, age 80, right hemisphere 11.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 14.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 12.8
Samples: 246

Max nTPM: 22.3
Min nTPM: 5.0
Std nTPM: 2.8
Median nTPM: 12.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 22.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 21.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 19.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 19.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 19.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 18.9
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 18.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 18.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 18.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 18.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 18.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 14.0
Samples: 246

Max nTPM: 22.1
Min nTPM: 6.0
Std nTPM: 2.8
Median nTPM: 13.8
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 22.1
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 21.9
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 21.6
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 21.4
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 21.2
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 21.1
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 20.9
GTEX-17F97-0011-R6a-SM-7EPGS 50-59 years, male 20.6
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 20.6
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 20.2
GTEX-12ZZX-0011-R6a-SM-5HL8L 40-49 years, female 20.1
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Brain - Putamen (basal ganglia)
Average nTPM: 13.4
Samples: 205

Max nTPM: 24.3
Min nTPM: 5.9
Std nTPM: 3.1
Median nTPM: 13.1
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 24.3
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 22.3
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 22.0
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 21.0
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 20.4
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 20.3
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 20.3
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 19.7
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 19.0
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 19.0
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 18.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 22.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 20.0
FF:10164-103B2 76 years, female 20.0
Globus pallidus
Scaled Tags Per Million: 17.2
FF:10161-103A8 76 years, female 17.8
FF:10175-103C4 60 years, female 16.5
Nucleus accumbens
Scaled Tags Per Million: 13.8
FF:10037-101F1 23-56 years, mixed 13.8
Putamen
Scaled Tags Per Million: 22.1
FF:10176-103C5 60 years, female 22.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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