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TISSUE RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
Dictionary
Tissue proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:134.1 nTPM
GTEx:134.1 nTPM
FANTOM5:34.0 Scaled Tags Per Million
Pig:124.1 nTPM
Mouse:85.3 nTPM

RETINA - Annotated protein expression
Pending normal tissue analysis

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 134.1
GTEx sample id Sample description nTPM
Retina
Average nTPM: 134.1
Samples: 105

Max nTPM: 277.0
Min nTPM: 29.2
Std nTPM: 57.4
Median nTPM:
466_1 57 years, female 277.0
246_1 77 years, male 259.0
415_1 77 years, female 252.7
217_1 76 years, male 252.3
126_1 63 years, male 234.7
425_1 59 years, female 230.1
405_1 91 years, male 222.8
499_1 55 years, female 220.8
189_1 76 years, male 220.5
163_1 78 years, male 218.7
414_1 84 years, female 218.3
389_1 86 years, female 217.9
149_1 88 years, male 213.0
153_1 70 years, female 212.6
377_1 82 years, female 211.2
468_1 89 years, male 203.1
526_1 61 years, male 199.4
251_1 78 years, male 194.7
406_1 79 years, male 194.2
9_1 66 years, female 192.4
413_1 59 years, female 188.3
503_1 68 years, male 187.8
517_1 88 years, male 177.7
237_1 82 years, male 177.5
394_1 75 years, female 177.4
320_1 89 years, female 175.6
293_1 68 years, female 173.5
292_1 71 years, male 168.3
376_1 75 years, female 165.9
229_1 69 years, female 165.7
518_1 75 years, female 165.4
81_1 67 years, male 165.2
313_1 79 years, female 163.8
480_1 63 years, male 163.6
396_1 62 years, male 163.0
254_1 77 years, female 160.3
319_1 81 years, male 159.5
490_1 67 years, female 152.6
177_1 74 years, male 149.5
316_1 62 years, male 149.5
18_1 88 years, male 148.8
115_1 83 years, male 148.6
32_1 67 years, male 145.6
172_1 72 years, female 145.1
291_1 76 years, male 144.0
265_1 87 years, male 142.6
264_1 73 years, female 141.8
35_1 74 years, female 139.4
286_1 68 years, female 136.2
335_1 73 years, female 135.8
117_1 61 years, male 135.5
324_1 76 years, male 135.3
288_1 66 years, female 134.6
318_1 68 years, male 129.9
384_1 83 years, male 129.8
347_1 72 years, male 127.8
375_1 74 years, female 126.9
495_1 57 years, female 123.5
43_1 64 years, female 122.0
501_1 88 years, male 118.3
321_1 62 years, female 110.5
404_1 82 years, female 109.5
355_1 70 years, female 109.2
311_1 78 years, male 106.6
349_1 83 years, male 106.6
356_1 87 years, female 103.4
145_1 84 years, male 101.3
322_1 76 years, male 100.7
162_1 79 years, female 100.2
42_1 85 years, male 96.8
243_1 75 years, male 96.3
307_1 66 years, female 96.1
137_1 83 years, male 95.4
218_1 71 years, female 93.6
315_1 62 years, female 93.0
142_1 61 years, female 92.9
352_1 62 years, male 92.6
386_1 76 years, male 91.3
139_1 64 years, female 87.3
350_1 84 years, female 86.2
6_1 73 years, female 83.9
89_1 63 years, male 83.7
17_1 71 years, male 81.0
351_1 91 years, male 79.2
4_1 88 years, female 78.0
353_1 82 years, female 77.8
295_1 61 years, female 77.4
314_1 67 years, male 75.9
354_1 81 years, female 73.5
99_1 64 years, male 72.5
109_1 81 years, female 72.4
447_1 81 years, male 69.2
317_1 60 years, male 68.8
506_1 65 years, male 68.8
119_1 70 years, female 67.5
348_1 84 years, male 66.0
266_1 85 years, male 61.8
41_1 94 years, female 58.2
173_1 67 years, male 55.2
120_1 70 years, female 46.5
2_1 77 years, female 42.4
379_1 60 years, male 42.4
491_1 89 years, female 38.7
452_1 88 years, female 36.0
308_1 70 years, female 29.2
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 34.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 34.0
FF:10030-101E3 24-65 years, mixed 34.0

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 124.1
Pig sample Sample description nTPM
Retina
nTPM: 124.1
Samples: 4

Max nTPM: 137.2
Min nTPM: 102.1
Sample A Female 123.8
Sample B Female 133.1
Sample C Male 137.2
Sample D Male 102.1

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 85.3
Mouse sample Sample description nTPM
Retina
nTPM: 85.3
Samples: 4

Max nTPM: 100.3
Min nTPM: 79.8
Sample A Male 81.1
Sample B Male 80.1
Sample C Female 79.8
Sample D Female 100.3

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