MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:20.6 nTPM
HPA:20.6 nTPM
GTEx:31.9 nTPM
FANTOM5:7.7 Scaled Tags Per Million
Pig:13.5 nTPM
Mouse:21.4 nTPM
Allen mouse:4.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 20.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.2
2019 Male, age 18, unknown 23.1
1830 Male, age 51, unknown 21.8
2586 Male, age 75, left hemisphere 20.3
2411 Female, age 72, unknown 20.0
2219 Male, age 76, both hemispheres 19.8
1833 Male, age 53, unknown 18.8
1870 Female, age 42, unknown 16.4
2828 Female, age 72, unknown 12.5
1827 Male, age 72, unknown 10.3
2666 Male, age 74, left hemisphere 8.6
Dorsal raphe nucleus
nTPM: 10.9
2750 Male, age 76, both hemispheres 17.0
2016 Female, age 72, unknown 10.4
1828 Male, age 53, unknown 10.3
2047 Male, age 72, unknown 9.7
2298 Female, age 72, unknown 7.0
Inferior colliculus
nTPM: 14.9
2849 Male, age 72, unknown 17.6
1848 Female, age 42, unknown 16.0
2097 Female, age 72, unknown 13.7
1890 Male, age 53, unknown 12.2
Median raphe nucleus
nTPM: 11.3
2220 Male, age 76, midline 11.3
Pedunculopontine tegmental nucleus
nTPM: 12.9
2334 Male, age 80, both hemispheres 14.2
1921 Female, age 85, both hemispheres 13.5
2338 Male, age 61, both hemispheres 11.0
Periaquaductal grey, anterior
nTPM: 14.5
2502 Female, age 75, unknown 22.3
1795 Male, age 51, unknown 10.9
1947 Male, age 18, unknown 10.2
Periaquaductal grey, dorsal
nTPM: 11.6
2464 Female, age 72, unknown 16.2
1831 Male, age 72, unknown 12.1
1840 Male, age 53, unknown 10.7
2850 Male, age 76, both hemispheres 7.3
Periaquaductal grey, lateral
nTPM: 12.5
2272 Male, age 74, both hemispheres 15.4
2053 Male, age 18, unknown 12.5
2140 Male, age 76, both hemispheres 9.5
Pretectal area
nTPM: 14.4
2316 Male, age 76, right hemisphere 21.4
2407 Male, age 75, both hemispheres 20.6
2825 Male, age 18, unknown 15.9
1815 Male, age 53, unknown 15.3
2007 Male, age 72, unknown 14.8
1817 Female, age 42, unknown 13.3
2224 Female, age 72, unknown 13.2
2667 Female, age 75, unknown 12.7
1944 Female, age 72, unknown 12.4
2273 Male, age 74, both hemispheres 10.5
1816 Male, age 51, unknown 7.9
Red nucleus
nTPM: 20.6
2785 Male, age 18, unknown 25.7
2769 Male, age 72, unknown 24.4
1865 Male, age 51, unknown 23.7
2227 Male, age 72, unknown 23.5
2503 Female, age 72, unknown 23.0
1904 Male, age 53, unknown 22.9
2584 Male, age 75, left hemisphere 20.5
2588 Male, age 74, left hemisphere 20.4
1954 Female, age 42, unknown 18.0
2823 Male, age 76, right hemisphere 16.8
1821 Female, age 72, unknown 16.1
2725 Female, age 75, unknown 11.7
Substantia nigra
nTPM: 14.7
2583 Male, age 75, right hemisphere 27.9
1941 Male, age 53, unknown 15.9
1851 Male, age 51, unknown 15.7
2409 Female, age 72, unknown 15.5
2699 Male, age 18, unknown 14.7
2590 Female, age 75, unknown 14.3
1889 Female, age 72, unknown 13.9
1916 Female, age 42, unknown 10.3
2665 Male, age 74, both hemispheres 10.0
2241 Male, age 72, unknown 9.3
Superior colliculus
nTPM: 16.1
1913 Female, age 42, unknown 20.8
1995 Male, age 72, unknown 20.2
1895 Male, age 76, right hemisphere 20.1
1839 Male, age 51, unknown 20.0
2668 Female, age 75, unknown 17.6
2664 Male, age 75, both hemispheres 15.6
2587 Male, age 74, left hemisphere 14.8
1796 Male, age 53, unknown 13.1
2087 Female, age 72, unknown 10.0
2261 Male, age 18, unknown 9.2
Ventral tegmental area
nTPM: 14.6
2223 Female, age 72, unknown 23.9
2410 Female, age 72, unknown 15.1
2021 Male, age 53, unknown 13.4
1942 Male, age 51, unknown 13.3
2218 Male, age 76, both hemispheres 11.2
1915 Female, age 42, unknown 10.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 31.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.9
Samples: 139

Max nTPM: 180.8
Min nTPM: 6.1
Std nTPM: 23.1
Median nTPM: 26.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 180.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 155.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 93.1
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 77.0
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 72.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 72.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 68.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 66.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 64.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 64.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 64.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 7.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 7.7
FF:10158-103A5 76 years, female 7.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 13.5
Pig sample Sample description nTPM
Midbrain
nTPM: 12.5
Samples: 4

Max nTPM: 34.3
Min nTPM: 2.2
Sample A Female 2.2
Sample B Female 4.6
Sample C Male 34.3
Sample D Male 8.8
Periaqueductal gray
nTPM: 4.8
Samples: 3

Max nTPM: 5.5
Min nTPM: 4.3
Sample B Female 4.3
Sample C Male 5.5
Sample D Male 4.7
Substantia nigra
nTPM: 4.8
Samples: 4

Max nTPM: 7.7
Min nTPM: 2.9
Sample A Female 7.7
Sample B Female 3.4
Sample C Male 5.2
Sample D Male 2.9
Superior colliculi
nTPM: 13.5
Samples: 4

Max nTPM: 19.8
Min nTPM: 7.9
Sample A Female 12.3
Sample B Female 7.9
Sample C Male 19.8
Sample D Male 13.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 21.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.4
Samples: 4

Max nTPM: 22.1
Min nTPM: 20.7
Sample A Male 22.1
Sample B Male 20.7
Sample C Female 22.0
Sample D Female 20.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.1
72128753 Antisense, RP_051017_04_C09, Mouse strain C57BL/6J (56 days, male) 4.9
77869820 Antisense, RP_070212_02_D05, Mouse strain C57BL/6J (56 days, male) 4.5
69407385 Antisense, RP_050414_01_E09, Mouse strain C57BL/6J (56 days, male) 3.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.