We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
PTMA
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • PTMA
TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:437.1 nTPM
GTEx:437.1 nTPM
FANTOM5:33.5 Scaled Tags Per Million

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 437.1
GTEx sample id Sample description nTPM
Retina
Average nTPM: 437.1
Samples: 105

Max nTPM: 611.3
Min nTPM: 325.6
Std nTPM: 59.9
Median nTPM:
126_1 63 years, male 611.3
137_1 83 years, male 596.2
42_1 85 years, male 573.8
162_1 79 years, female 570.2
218_1 71 years, female 561.1
117_1 61 years, male 559.1
145_1 84 years, male 557.1
17_1 71 years, male 552.0
35_1 74 years, female 536.5
315_1 62 years, female 530.4
495_1 57 years, female 520.2
265_1 87 years, male 518.2
386_1 76 years, male 515.7
163_1 78 years, male 505.5
518_1 75 years, female 498.2
384_1 83 years, male 498.0
4_1 88 years, female 493.6
6_1 73 years, female 490.2
237_1 82 years, male 488.2
353_1 82 years, female 487.8
109_1 81 years, female 479.8
499_1 55 years, female 478.7
2_1 77 years, female 472.7
377_1 82 years, female 470.4
375_1 74 years, female 465.8
379_1 60 years, male 465.7
115_1 83 years, male 463.3
173_1 67 years, male 462.3
18_1 88 years, male 460.8
99_1 64 years, male 459.0
308_1 70 years, female 458.1
319_1 81 years, male 455.6
43_1 64 years, female 454.3
89_1 63 years, male 453.5
311_1 78 years, male 452.1
266_1 85 years, male 451.1
415_1 77 years, female 450.3
149_1 88 years, male 449.4
293_1 68 years, female 448.8
526_1 61 years, male 446.2
120_1 70 years, female 443.4
9_1 66 years, female 442.5
356_1 87 years, female 442.2
351_1 91 years, male 441.8
490_1 67 years, female 439.4
350_1 84 years, female 439.1
491_1 89 years, female 439.1
447_1 81 years, male 436.4
468_1 89 years, male 434.3
503_1 68 years, male 432.7
317_1 60 years, male 429.9
354_1 81 years, female 429.1
466_1 57 years, female 428.9
452_1 88 years, female 428.5
355_1 70 years, female 428.4
394_1 75 years, female 428.2
119_1 70 years, female 427.9
142_1 61 years, female 427.7
246_1 77 years, male 427.0
396_1 62 years, male 424.2
139_1 64 years, female 423.9
501_1 88 years, male 422.7
335_1 73 years, female 421.8
314_1 67 years, male 420.1
517_1 88 years, male 418.3
243_1 75 years, male 416.7
177_1 74 years, male 415.9
189_1 76 years, male 413.2
254_1 77 years, female 411.3
32_1 67 years, male 410.1
322_1 76 years, male 409.6
313_1 79 years, female 406.3
292_1 71 years, male 405.5
288_1 66 years, female 404.6
251_1 78 years, male 403.5
349_1 83 years, male 400.5
376_1 75 years, female 400.5
307_1 66 years, female 399.4
81_1 67 years, male 398.9
217_1 76 years, male 397.0
153_1 70 years, female 396.7
291_1 76 years, male 396.2
41_1 94 years, female 395.2
389_1 86 years, female 393.4
347_1 72 years, male 390.5
264_1 73 years, female 385.0
404_1 82 years, female 384.5
172_1 72 years, female 382.0
286_1 68 years, female 381.1
321_1 62 years, female 378.4
295_1 61 years, female 375.8
506_1 65 years, male 373.9
316_1 62 years, male 372.9
324_1 76 years, male 372.3
348_1 84 years, male 372.3
414_1 84 years, female 360.1
320_1 89 years, female 358.7
318_1 68 years, male 349.2
352_1 62 years, male 348.3
229_1 69 years, female 344.2
425_1 59 years, female 336.7
480_1 63 years, male 333.9
405_1 91 years, male 331.7
406_1 79 years, male 329.3
413_1 59 years, female 325.6
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 33.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 33.5
FF:10030-101E3 24-65 years, mixed 33.5

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.