MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:46.4 nTPM
HPA:46.4 nTPM
GTEx:51.0 nTPM
FANTOM5:24.5 Scaled Tags Per Million
Pig:36.7 nTPM
Mouse:41.5 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 46.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.0
2019 Male, age 18, unknown 42.7
1827 Male, age 72, unknown 40.5
1870 Female, age 42, unknown 40.4
1833 Male, age 53, unknown 40.3
2411 Female, age 72, unknown 40.1
1830 Male, age 51, unknown 39.7
2219 Male, age 76, both hemispheres 39.4
2586 Male, age 75, left hemisphere 39.2
2828 Female, age 72, unknown 39.1
2666 Male, age 74, left hemisphere 38.9
Dorsal raphe nucleus
nTPM: 43.7
2298 Female, age 72, unknown 47.2
2016 Female, age 72, unknown 45.4
1828 Male, age 53, unknown 43.9
2047 Male, age 72, unknown 42.3
2750 Male, age 76, both hemispheres 39.4
Inferior colliculus
nTPM: 42.8
2097 Female, age 72, unknown 43.8
1890 Male, age 53, unknown 43.6
2849 Male, age 72, unknown 42.6
1848 Female, age 42, unknown 41.2
Median raphe nucleus
nTPM: 40.6
2220 Male, age 76, midline 40.6
Pedunculopontine tegmental nucleus
nTPM: 40.5
1921 Female, age 85, both hemispheres 41.5
2334 Male, age 80, both hemispheres 40.6
2338 Male, age 61, both hemispheres 39.4
Periaquaductal grey, anterior
nTPM: 41.6
1795 Male, age 51, unknown 41.8
2502 Female, age 75, unknown 41.6
1947 Male, age 18, unknown 41.2
Periaquaductal grey, dorsal
nTPM: 44.3
2850 Male, age 76, both hemispheres 49.1
1840 Male, age 53, unknown 44.9
2464 Female, age 72, unknown 41.7
1831 Male, age 72, unknown 41.4
Periaquaductal grey, lateral
nTPM: 46.4
2272 Male, age 74, both hemispheres 52.2
2140 Male, age 76, both hemispheres 45.4
2053 Male, age 18, unknown 41.5
Pretectal area
nTPM: 42.6
2273 Male, age 74, both hemispheres 51.6
2224 Female, age 72, unknown 44.2
2007 Male, age 72, unknown 42.5
1816 Male, age 51, unknown 42.2
1817 Female, age 42, unknown 42.2
1944 Female, age 72, unknown 42.2
2667 Female, age 75, unknown 42.0
1815 Male, age 53, unknown 41.6
2825 Male, age 18, unknown 41.2
2407 Male, age 75, both hemispheres 40.0
2316 Male, age 76, right hemisphere 39.2
Red nucleus
nTPM: 40.6
1821 Female, age 72, unknown 42.8
2785 Male, age 18, unknown 42.4
2725 Female, age 75, unknown 41.6
1904 Male, age 53, unknown 41.1
2503 Female, age 72, unknown 41.0
2769 Male, age 72, unknown 41.0
1954 Female, age 42, unknown 40.7
2227 Male, age 72, unknown 40.5
1865 Male, age 51, unknown 40.2
2823 Male, age 76, right hemisphere 40.0
2588 Male, age 74, left hemisphere 38.3
2584 Male, age 75, left hemisphere 37.7
Substantia nigra
nTPM: 41.7
2409 Female, age 72, unknown 45.7
2241 Male, age 72, unknown 42.2
1889 Female, age 72, unknown 42.1
2699 Male, age 18, unknown 41.9
1851 Male, age 51, unknown 41.6
2665 Male, age 74, both hemispheres 41.6
1916 Female, age 42, unknown 41.5
1941 Male, age 53, unknown 40.9
2590 Female, age 75, unknown 40.7
2583 Male, age 75, right hemisphere 39.0
Superior colliculus
nTPM: 41.3
2587 Male, age 74, left hemisphere 44.0
1995 Male, age 72, unknown 42.2
2087 Female, age 72, unknown 41.9
1839 Male, age 51, unknown 41.3
2664 Male, age 75, both hemispheres 41.1
2668 Female, age 75, unknown 41.1
2261 Male, age 18, unknown 40.8
1913 Female, age 42, unknown 40.5
1895 Male, age 76, right hemisphere 40.1
1796 Male, age 53, unknown 39.7
Ventral tegmental area
nTPM: 40.9
2410 Female, age 72, unknown 41.8
1915 Female, age 42, unknown 41.7
1942 Male, age 51, unknown 41.1
2021 Male, age 53, unknown 40.8
2218 Male, age 76, both hemispheres 40.4
2223 Female, age 72, unknown 39.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 51.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 51.0
Samples: 139

Max nTPM: 107.8
Min nTPM: 18.9
Std nTPM: 16.1
Median nTPM: 47.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 107.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 102.5
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 98.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 90.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 89.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 87.7
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 82.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 81.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 79.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 76.0
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 75.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.5
FF:10158-103A5 76 years, female 24.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 36.7
Pig sample Sample description nTPM
Midbrain
nTPM: 26.6
Samples: 4

Max nTPM: 28.9
Min nTPM: 23.7
Sample A Female 25.8
Sample B Female 27.8
Sample C Male 23.7
Sample D Male 28.9
Periaqueductal gray
nTPM: 36.7
Samples: 3

Max nTPM: 42.9
Min nTPM: 31.6
Sample B Female 31.6
Sample C Male 35.7
Sample D Male 42.9
Substantia nigra
nTPM: 26.6
Samples: 4

Max nTPM: 31.3
Min nTPM: 20.9
Sample A Female 31.3
Sample B Female 26.7
Sample C Male 27.5
Sample D Male 20.9
Superior colliculi
nTPM: 27.6
Samples: 4

Max nTPM: 35.3
Min nTPM: 19.8
Sample A Female 30.4
Sample B Female 35.3
Sample C Male 19.8
Sample D Male 24.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 41.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 41.5
Samples: 4

Max nTPM: 48.3
Min nTPM: 35.7
Sample A Male 42.9
Sample B Male 35.7
Sample C Female 39.1
Sample D Female 48.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71210514 Antisense, RP_050810_04_C12, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.