BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: High
Neuronal cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:37.8 nTPM
HPA:37.8 nTPM
GTEx:33.1 nTPM
FANTOM5:85.0 Scaled Tags Per Million
Pig:72.1 nTPM
Mouse:22.5 nTPM
Allen mouse:0.7 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA041189Antibody HPA051647Antibody CAB012264
Glial cells HighHighHigh
Neuronal cells HighHighHigh







BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 37.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 29.0
1781 Male, age 74, unknown 32.5
2290 Female, age 72, unknown 31.2
2288 Male, age 75, left hemisphere 30.8
2289 Male, age 61, right hemisphere 30.3
2481 Female, age 94, left hemisphere 29.6
1857 Female, age 85, left hemisphere 27.0
2846 Female, age 79, unknown 25.9
1854 Male, age 80, left hemisphere 24.7
Claustrum
nTPM: 31.6
2292 Female, age 85, both hemispheres 37.9
2284 Female, age 91, both hemispheres 33.0
2491 Male, age 75, both hemispheres 32.4
2198 Male, age 80, both hemispheres 32.2
1956 Male, age 74, unknown 31.8
2645 Female, age 72, unknown 31.3
2196 Female, age 79, unknown 30.5
2568 Male, age 61, both hemispheres 28.5
2392 Female, age 94, both hemispheres 27.0
Globus pallidus, externus
nTPM: 37.8
2646 Male, age 61, right hemisphere 41.5
2772 Female, age 79, unknown 39.5
2567 Female, age 72, unknown 38.8
1996 Male, age 80, right hemisphere 37.9
2395 Male, age 75, both hemispheres 31.5
Globus pallidus, internus
nTPM: 37.4
2287 Male, age 75, right hemisphere 44.2
2111 Female, age 85, right hemisphere 42.1
2778 Female, age 91, both hemispheres 39.3
1818 Male, age 74, unknown 35.5
2566 Female, age 72, unknown 35.5
2037 Male, age 80, right hemisphere 33.8
2483 Female, age 94, right hemisphere 31.2
Nucleus accumbens
nTPM: 29.9
2391 Female, age 94, left hemisphere 32.8
2286 Male, age 75, left hemisphere 32.4
1806 Female, age 85, left hemisphere 31.4
2698 Female, age 72, unknown 30.7
2732 Male, age 80, right hemisphere 30.6
2824 Male, age 61, right hemisphere 28.7
1783 Male, age 74, unknown 28.3
1856 Female, age 91, right hemisphere 24.3
Nucleus basalis of Meynert
nTPM: 29.5
2569 Male, age 61, both hemispheres 36.3
2484 Female, age 94, left hemisphere 28.9
2821 Male, age 75, both hemispheres 28.7
2393 Male, age 80, right hemisphere 24.1
Nucleus of the diagonal band
nTPM: 28.0
2195 Female, age 85, both hemispheres 29.4
1979 Male, age 74, unknown 28.5
2029 Male, age 61, right hemisphere 27.9
2775 Male, age 80, right hemisphere 27.7
1812 Female, age 91, both hemispheres 26.5
Olfactory tubercle
nTPM: 28.0
2856 Male, age 75, right hemisphere 31.4
2487 Female, age 94, left hemisphere 28.2
1846 Male, age 80, right hemisphere 26.2
1998 Female, age 91, both hemispheres 26.2
Putamen
nTPM: 28.2
2647 Male, age 75, left hemisphere 35.1
2489 Female, age 72, unknown 30.6
2482 Female, age 94, left hemisphere 27.6
1829 Male, age 74, unknown 27.2
1937 Female, age 91, right hemisphere 27.0
2466 Female, age 79, unknown 25.3
1838 Male, age 80, right hemisphere 24.5
Septal nuclei
nTPM: 28.0
2059 Female, age 85, both hemispheres 29.9
2629 Female, age 94, right hemisphere 29.7
1960 Male, age 74, unknown 29.2
2199 Male, age 80, right hemisphere 28.4
2031 Female, age 72, unknown 27.4
2394 Male, age 61, left hemisphere 26.9
2009 Female, age 91, both hemispheres 24.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 33.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 29.7
Samples: 246

Max nTPM: 93.7
Min nTPM: 9.4
Std nTPM: 10.0
Median nTPM: 28.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 93.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 70.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 60.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 60.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 58.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 57.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 55.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 53.0
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 52.2
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 51.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 49.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 32.1
Samples: 246

Max nTPM: 146.7
Min nTPM: 13.7
Std nTPM: 15.1
Median nTPM: 28.9
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 146.7
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 108.0
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 105.4
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 105.2
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 70.7
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 66.5
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 65.0
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 64.4
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 63.4
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 61.4
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 56.8
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Brain - Putamen (basal ganglia)
Average nTPM: 33.1
Samples: 205

Max nTPM: 106.1
Min nTPM: 14.6
Std nTPM: 11.6
Median nTPM: 30.3
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 106.1
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 79.7
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 76.6
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 65.3
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 64.9
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 58.5
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 57.6
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 57.3
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 56.1
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 55.7
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 54.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 85.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 55.4
FF:10164-103B2 76 years, female 55.4
Globus pallidus
Scaled Tags Per Million: 85.0
FF:10161-103A8 76 years, female 85.6
FF:10175-103C4 60 years, female 84.4
Nucleus accumbens
Scaled Tags Per Million: 73.5
FF:10037-101F1 23-56 years, mixed 73.5
Putamen
Scaled Tags Per Million: 60.5
FF:10176-103C5 60 years, female 60.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 72.1
Pig sample Sample description nTPM
Caudate
nTPM: 70.2
Samples: 4

Max nTPM: 78.5
Min nTPM: 62.7
Sample A Female 62.7
Sample B Female 73.5
Sample C Male 78.5
Sample D Male 66.1
Putamen
nTPM: 72.2
Samples: 4

Max nTPM: 82.7
Min nTPM: 52.5
Sample A Female 73.5
Sample B Female 52.5
Sample C Male 79.9
Sample D Male 82.7
Septum
nTPM: 61.8
Samples: 4

Max nTPM: 71.7
Min nTPM: 56.4
Sample A Female 71.7
Sample B Female 58.8
Sample C Male 56.4
Sample D Male 60.4
Ventral pallidum
nTPM: 62.5
Samples: 4

Max nTPM: 70.9
Min nTPM: 51.9
Sample A Female 51.9
Sample B Female 70.9
Sample C Male 66.9
Sample D Male 60.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 22.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 22.5
Samples: 4

Max nTPM: 25.1
Min nTPM: 19.1
Sample A Male 24.6
Sample B Male 25.1
Sample C Female 19.1
Sample D Female 21.3
Septum
nTPM: 20.2
Samples: 4

Max nTPM: 21.7
Min nTPM: 18.6
Sample A Male 19.3
Sample B Male 21.2
Sample C Female 21.7
Sample D Female 18.6
Ventral forebrain
nTPM: 19.4
Samples: 4

Max nTPM: 23.5
Min nTPM: 16.6
Sample A Male 18.9
Sample B Male 18.4
Sample C Female 23.5
Sample D Female 16.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.7
70545961 Antisense, RP_050623_03_C12, Mouse strain C57BL/6J (56 days, male) 0.7
Pallidum
Expression energy: 0.6
70545961 Antisense, RP_050623_03_C12, Mouse strain C57BL/6J (56 days, male) 0.6

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