MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:23.5 nTPM
HPA:23.5 nTPM
GTEx:29.5 nTPM
FANTOM5:86.4 Scaled Tags Per Million
Pig:22.6 nTPM
Mouse:34.2 nTPM
Allen mouse:1.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 23.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.8
1870 Female, age 42, unknown 24.2
2411 Female, age 72, unknown 22.6
1830 Male, age 51, unknown 22.2
2019 Male, age 18, unknown 22.2
1827 Male, age 72, unknown 22.0
1833 Male, age 53, unknown 21.9
2219 Male, age 76, both hemispheres 21.8
2586 Male, age 75, left hemisphere 20.8
2828 Female, age 72, unknown 20.1
2666 Male, age 74, left hemisphere 20.0
Dorsal raphe nucleus
nTPM: 21.9
2016 Female, age 72, unknown 22.7
2750 Male, age 76, both hemispheres 22.1
2298 Female, age 72, unknown 21.9
1828 Male, age 53, unknown 21.8
2047 Male, age 72, unknown 21.2
Inferior colliculus
nTPM: 22.0
2097 Female, age 72, unknown 23.0
1890 Male, age 53, unknown 22.4
1848 Female, age 42, unknown 21.4
2849 Male, age 72, unknown 21.2
Median raphe nucleus
nTPM: 23.5
2220 Male, age 76, midline 23.5
Pedunculopontine tegmental nucleus
nTPM: 22.3
2334 Male, age 80, both hemispheres 22.8
1921 Female, age 85, both hemispheres 22.2
2338 Male, age 61, both hemispheres 21.9
Periaquaductal grey, anterior
nTPM: 21.7
1947 Male, age 18, unknown 22.7
2502 Female, age 75, unknown 22.6
1795 Male, age 51, unknown 19.9
Periaquaductal grey, dorsal
nTPM: 22.6
2850 Male, age 76, both hemispheres 23.6
1840 Male, age 53, unknown 23.0
1831 Male, age 72, unknown 22.1
2464 Female, age 72, unknown 21.6
Periaquaductal grey, lateral
nTPM: 22.1
2140 Male, age 76, both hemispheres 23.1
2053 Male, age 18, unknown 21.8
2272 Male, age 74, both hemispheres 21.4
Pretectal area
nTPM: 22.6
2273 Male, age 74, both hemispheres 24.1
2667 Female, age 75, unknown 23.2
1815 Male, age 53, unknown 23.0
1816 Male, age 51, unknown 23.0
2224 Female, age 72, unknown 22.7
1817 Female, age 42, unknown 22.6
1944 Female, age 72, unknown 22.6
2007 Male, age 72, unknown 22.4
2316 Male, age 76, right hemisphere 22.4
2825 Male, age 18, unknown 21.9
2407 Male, age 75, both hemispheres 21.2
Red nucleus
nTPM: 22.5
1821 Female, age 72, unknown 24.3
1865 Male, age 51, unknown 23.7
1954 Female, age 42, unknown 23.4
1904 Male, age 53, unknown 23.2
2503 Female, age 72, unknown 22.8
2227 Male, age 72, unknown 22.5
2785 Male, age 18, unknown 22.2
2823 Male, age 76, right hemisphere 22.1
2769 Male, age 72, unknown 21.9
2725 Female, age 75, unknown 21.6
2584 Male, age 75, left hemisphere 21.3
2588 Male, age 74, left hemisphere 20.6
Substantia nigra
nTPM: 22.6
2241 Male, age 72, unknown 24.5
1889 Female, age 72, unknown 23.6
2409 Female, age 72, unknown 23.5
1916 Female, age 42, unknown 22.9
1851 Male, age 51, unknown 22.6
2590 Female, age 75, unknown 22.1
1941 Male, age 53, unknown 22.0
2699 Male, age 18, unknown 22.0
2583 Male, age 75, right hemisphere 21.4
2665 Male, age 74, both hemispheres 21.4
Superior colliculus
nTPM: 21.8
2087 Female, age 72, unknown 22.7
1995 Male, age 72, unknown 22.4
1913 Female, age 42, unknown 22.2
2587 Male, age 74, left hemisphere 22.2
2261 Male, age 18, unknown 22.0
1839 Male, age 51, unknown 21.7
1895 Male, age 76, right hemisphere 21.6
2668 Female, age 75, unknown 21.6
1796 Male, age 53, unknown 21.1
2664 Male, age 75, both hemispheres 20.6
Ventral tegmental area
nTPM: 21.9
2218 Male, age 76, both hemispheres 22.3
1915 Female, age 42, unknown 22.2
1942 Male, age 51, unknown 22.0
2410 Female, age 72, unknown 21.9
2223 Female, age 72, unknown 21.8
2021 Male, age 53, unknown 21.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 29.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 29.5
Samples: 139

Max nTPM: 46.2
Min nTPM: 20.2
Std nTPM: 4.5
Median nTPM: 28.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 46.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 45.8
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 41.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 41.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 39.1
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 39.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 38.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 38.4
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 38.0
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 36.9
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 36.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 86.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 86.4
FF:10158-103A5 76 years, female 86.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 22.6
Pig sample Sample description nTPM
Midbrain
nTPM: 22.6
Samples: 4

Max nTPM: 24.2
Min nTPM: 21.0
Sample A Female 24.2
Sample B Female 23.1
Sample C Male 22.1
Sample D Male 21.0
Periaqueductal gray
nTPM: 21.8
Samples: 3

Max nTPM: 22.8
Min nTPM: 21.2
Sample B Female 21.2
Sample C Male 21.4
Sample D Male 22.8
Substantia nigra
nTPM: 21.0
Samples: 4

Max nTPM: 24.0
Min nTPM: 18.0
Sample A Female 24.0
Sample B Female 21.5
Sample C Male 20.6
Sample D Male 18.0
Superior colliculi
nTPM: 22.3
Samples: 4

Max nTPM: 23.4
Min nTPM: 21.1
Sample A Female 22.4
Sample B Female 23.4
Sample C Male 22.3
Sample D Male 21.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 34.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 34.2
Samples: 4

Max nTPM: 37.1
Min nTPM: 32.0
Sample A Male 32.0
Sample B Male 34.8
Sample C Female 37.1
Sample D Female 32.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.9
75043605 Antisense, RP_060417_01_A04, Mouse strain C57BL/6J (56 days, male) 2.0
69059861 Antisense, RP_050317_04_C06, Mouse strain C57BL/6J (56 days, male) 1.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.