MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:50.4 nTPM
HPA:50.4 nTPM
GTEx:45.5 nTPM
FANTOM5:114.4 Scaled Tags Per Million
Pig:60.2 nTPM
Mouse:76.9 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 50.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 46.8
2019 Male, age 18, unknown 52.6
2411 Female, age 72, unknown 50.6
1870 Female, age 42, unknown 50.2
1833 Male, age 53, unknown 47.7
1830 Male, age 51, unknown 47.0
2828 Female, age 72, unknown 46.1
1827 Male, age 72, unknown 45.5
2586 Male, age 75, left hemisphere 45.3
2666 Male, age 74, left hemisphere 42.1
2219 Male, age 76, both hemispheres 41.2
Dorsal raphe nucleus
nTPM: 46.0
2016 Female, age 72, unknown 47.6
2298 Female, age 72, unknown 47.2
2750 Male, age 76, both hemispheres 47.2
1828 Male, age 53, unknown 45.7
2047 Male, age 72, unknown 42.0
Inferior colliculus
nTPM: 46.5
2097 Female, age 72, unknown 48.7
1890 Male, age 53, unknown 47.3
1848 Female, age 42, unknown 46.1
2849 Male, age 72, unknown 43.8
Median raphe nucleus
nTPM: 42.9
2220 Male, age 76, midline 42.9
Pedunculopontine tegmental nucleus
nTPM: 43.3
2334 Male, age 80, both hemispheres 44.1
1921 Female, age 85, both hemispheres 43.8
2338 Male, age 61, both hemispheres 42.0
Periaquaductal grey, anterior
nTPM: 43.6
2502 Female, age 75, unknown 46.5
1947 Male, age 18, unknown 43.4
1795 Male, age 51, unknown 40.8
Periaquaductal grey, dorsal
nTPM: 45.2
2464 Female, age 72, unknown 46.4
2850 Male, age 76, both hemispheres 46.4
1840 Male, age 53, unknown 44.2
1831 Male, age 72, unknown 43.9
Periaquaductal grey, lateral
nTPM: 45.4
2140 Male, age 76, both hemispheres 47.6
2053 Male, age 18, unknown 44.6
2272 Male, age 74, both hemispheres 44.0
Pretectal area
nTPM: 47.1
1815 Male, age 53, unknown 52.5
1817 Female, age 42, unknown 49.7
2007 Male, age 72, unknown 48.5
2407 Male, age 75, both hemispheres 47.9
2273 Male, age 74, both hemispheres 47.7
2667 Female, age 75, unknown 47.6
1816 Male, age 51, unknown 47.5
1944 Female, age 72, unknown 47.3
2316 Male, age 76, right hemisphere 45.0
2825 Male, age 18, unknown 42.8
2224 Female, age 72, unknown 42.2
Red nucleus
nTPM: 50.4
1865 Male, age 51, unknown 55.7
1904 Male, age 53, unknown 54.1
1821 Female, age 72, unknown 53.9
2769 Male, age 72, unknown 52.7
2785 Male, age 18, unknown 52.6
2503 Female, age 72, unknown 51.8
1954 Female, age 42, unknown 51.1
2227 Male, age 72, unknown 50.6
2823 Male, age 76, right hemisphere 49.0
2588 Male, age 74, left hemisphere 47.2
2725 Female, age 75, unknown 44.6
2584 Male, age 75, left hemisphere 41.3
Substantia nigra
nTPM: 47.5
1851 Male, age 51, unknown 49.8
2409 Female, age 72, unknown 49.2
2590 Female, age 75, unknown 49.1
1889 Female, age 72, unknown 48.4
2241 Male, age 72, unknown 48.4
2583 Male, age 75, right hemisphere 47.4
2665 Male, age 74, both hemispheres 47.4
2699 Male, age 18, unknown 46.9
1916 Female, age 42, unknown 46.3
1941 Male, age 53, unknown 42.5
Superior colliculus
nTPM: 47.9
1913 Female, age 42, unknown 53.1
1995 Male, age 72, unknown 52.8
2587 Male, age 74, left hemisphere 49.9
2668 Female, age 75, unknown 48.0
2087 Female, age 72, unknown 47.1
1895 Male, age 76, right hemisphere 46.8
1796 Male, age 53, unknown 46.4
2261 Male, age 18, unknown 46.0
1839 Male, age 51, unknown 44.7
2664 Male, age 75, both hemispheres 44.6
Ventral tegmental area
nTPM: 47.0
2410 Female, age 72, unknown 53.3
2223 Female, age 72, unknown 47.4
1915 Female, age 42, unknown 46.9
1942 Male, age 51, unknown 45.4
2021 Male, age 53, unknown 44.5
2218 Male, age 76, both hemispheres 44.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 45.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 45.5
Samples: 139

Max nTPM: 75.2
Min nTPM: 26.1
Std nTPM: 10.1
Median nTPM: 44.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 75.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 70.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 67.6
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 66.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 66.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 64.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 64.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 63.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 62.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 62.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 61.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 114.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 114.4
FF:10158-103A5 76 years, female 114.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 60.2
Pig sample Sample description nTPM
Midbrain
nTPM: 60.2
Samples: 4

Max nTPM: 82.7
Min nTPM: 50.2
Sample A Female 82.7
Sample B Female 52.8
Sample C Male 55.2
Sample D Male 50.2
Periaqueductal gray
nTPM: 52.9
Samples: 3

Max nTPM: 54.9
Min nTPM: 50.6
Sample B Female 54.9
Sample C Male 53.1
Sample D Male 50.6
Substantia nigra
nTPM: 53.8
Samples: 4

Max nTPM: 58.2
Min nTPM: 46.8
Sample A Female 57.3
Sample B Female 46.8
Sample C Male 52.9
Sample D Male 58.2
Superior colliculi
nTPM: 56.9
Samples: 4

Max nTPM: 58.6
Min nTPM: 53.6
Sample A Female 58.6
Sample B Female 57.9
Sample C Male 53.6
Sample D Male 57.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 76.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 76.9
Samples: 4

Max nTPM: 85.4
Min nTPM: 70.0
Sample A Male 70.0
Sample B Male 73.4
Sample C Female 85.4
Sample D Female 78.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
1235 Antisense, RP_Baylor_102922, Mouse strain C57BL/6J (56 days, male) 0.3
1236 Antisense, RP_Baylor_102922, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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