BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:12.5 nTPM
HPA:12.5 nTPM
GTEx:10.9 nTPM
FANTOM5:50.0 Scaled Tags Per Million
Mouse:16.3 nTPM
Allen mouse:24.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA028606
Glial cells Medium
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 12.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 11.5
2846 Female, age 79, unknown 12.4
2288 Male, age 75, left hemisphere 12.0
2289 Male, age 61, right hemisphere 11.7
2481 Female, age 94, left hemisphere 11.7
2290 Female, age 72, unknown 11.4
1857 Female, age 85, left hemisphere 11.3
1781 Male, age 74, unknown 10.9
1854 Male, age 80, left hemisphere 10.8
Claustrum
nTPM: 11.0
1956 Male, age 74, unknown 11.6
2292 Female, age 85, both hemispheres 11.6
2198 Male, age 80, both hemispheres 11.2
2392 Female, age 94, both hemispheres 11.0
2284 Female, age 91, both hemispheres 10.9
2568 Male, age 61, both hemispheres 10.9
2196 Female, age 79, unknown 10.8
2645 Female, age 72, unknown 10.7
2491 Male, age 75, both hemispheres 10.5
Globus pallidus, externus
nTPM: 12.2
2395 Male, age 75, both hemispheres 12.9
2772 Female, age 79, unknown 12.5
1996 Male, age 80, right hemisphere 12.3
2646 Male, age 61, right hemisphere 11.7
2567 Female, age 72, unknown 11.6
Globus pallidus, internus
nTPM: 12.5
2287 Male, age 75, right hemisphere 14.5
2111 Female, age 85, right hemisphere 12.5
2483 Female, age 94, right hemisphere 12.5
2037 Male, age 80, right hemisphere 12.2
2566 Female, age 72, unknown 11.9
2778 Female, age 91, both hemispheres 11.9
1818 Male, age 74, unknown 11.7
Nucleus accumbens
nTPM: 11.6
2391 Female, age 94, left hemisphere 12.2
2698 Female, age 72, unknown 12.0
2824 Male, age 61, right hemisphere 12.0
2286 Male, age 75, left hemisphere 11.7
1856 Female, age 91, right hemisphere 11.5
1783 Male, age 74, unknown 11.4
1806 Female, age 85, left hemisphere 11.3
2732 Male, age 80, right hemisphere 11.2
Nucleus basalis of Meynert
nTPM: 11.7
2484 Female, age 94, left hemisphere 12.1
2393 Male, age 80, right hemisphere 11.8
2569 Male, age 61, both hemispheres 11.8
2821 Male, age 75, both hemispheres 11.3
Nucleus of the diagonal band
nTPM: 11.5
2775 Male, age 80, right hemisphere 11.8
1979 Male, age 74, unknown 11.5
2029 Male, age 61, right hemisphere 11.4
2195 Female, age 85, both hemispheres 11.4
1812 Female, age 91, both hemispheres 11.3
Olfactory tubercle
nTPM: 10.6
1846 Male, age 80, right hemisphere 10.8
1998 Female, age 91, both hemispheres 10.7
2856 Male, age 75, right hemisphere 10.6
2487 Female, age 94, left hemisphere 10.1
Putamen
nTPM: 11.4
2482 Female, age 94, left hemisphere 12.0
1829 Male, age 74, unknown 11.9
1937 Female, age 91, right hemisphere 11.6
2466 Female, age 79, unknown 11.4
2489 Female, age 72, unknown 11.1
1838 Male, age 80, right hemisphere 10.9
2647 Male, age 75, left hemisphere 10.8
Septal nuclei
nTPM: 11.0
2031 Female, age 72, unknown 11.4
1960 Male, age 74, unknown 11.2
2009 Female, age 91, both hemispheres 11.2
2394 Male, age 61, left hemisphere 11.1
2199 Male, age 80, right hemisphere 10.9
2629 Female, age 94, right hemisphere 10.9
2059 Female, age 85, both hemispheres 10.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 10.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 10.4
Samples: 246

Max nTPM: 20.2
Min nTPM: 4.8
Std nTPM: 2.5
Median nTPM: 10.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 20.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 20.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 18.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 17.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 17.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 17.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 16.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 16.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 16.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 16.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 15.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 10.6
Samples: 246

Max nTPM: 18.6
Min nTPM: 5.3
Std nTPM: 2.4
Median nTPM: 10.2
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 18.6
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 18.3
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 17.8
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 17.5
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 17.0
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 16.8
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 16.5
GTEX-TSE9-0011-R6A-SM-3DB7L 60-69 years, female 16.3
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 15.8
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 15.7
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 15.5
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Brain - Putamen (basal ganglia)
Average nTPM: 10.9
Samples: 205

Max nTPM: 22.2
Min nTPM: 4.1
Std nTPM: 2.4
Median nTPM: 10.6
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 22.2
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 19.3
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 18.9
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 16.6
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 16.5
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 16.4
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 16.2
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 16.0
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 15.9
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 15.2
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 14.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 50.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 41.5
FF:10164-103B2 76 years, female 41.5
Globus pallidus
Scaled Tags Per Million: 43.0
FF:10161-103A8 76 years, female 47.5
FF:10175-103C4 60 years, female 38.6
Nucleus accumbens
Scaled Tags Per Million: 35.1
FF:10037-101F1 23-56 years, mixed 35.1
Putamen
Scaled Tags Per Million: 50.0
FF:10176-103C5 60 years, female 50.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 16.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 16.3
Samples: 4

Max nTPM: 17.9
Min nTPM: 15.4
Sample A Male 17.9
Sample B Male 16.2
Sample C Female 15.4
Sample D Female 15.8
Septum
nTPM: 15.7
Samples: 4

Max nTPM: 17.4
Min nTPM: 14.7
Sample A Male 14.8
Sample B Male 15.7
Sample C Female 14.7
Sample D Female 17.4
Ventral forebrain
nTPM: 14.1
Samples: 4

Max nTPM: 15.7
Min nTPM: 12.0
Sample A Male 15.7
Sample B Male 14.5
Sample C Female 12.0
Sample D Female 14.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 24.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 24.2
69626564 Antisense, RP_050426_04_H05, Mouse strain C57BL/6J (56 days, male) 24.2
Pallidum
Expression energy: 23.1
69626564 Antisense, RP_050426_04_H05, Mouse strain C57BL/6J (56 days, male) 23.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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